当前解析结果
SmilChr01G005656| 统一新 Gene ID | SmilChr01G005656 |
|---|---|
| 名称 | SmilChr01G005656 |
| 描述 | putative glycosyltransferase 7 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72908465 - 72910533 / + |
| NCBI Gene ID | LOC131012773 |
|---|---|
| GeneID | 131012773 |
| locus_tag | - |
| NCBI Name | LOC131012773 |
| 原始查询 | LOC131012773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative glycosyltransferase 7 |
| 产物 | putative glycosyltransferase 7 |
| Arabidopsis | AT2G22900 (AT2G22900)Galactosyl transferase GMA12/MNN10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:816821] identity=56.8; qcov=0.897; evalue=1.86e-151; confidence=high |
| Rice | Os02g0723200 (OsGT7)- identity=49.7; qcov=0.882; evalue=2.42e-125; confidence=high |
| GO | GO:0005768 (endosome); GO:0005802 (trans-Golgi network); GO:0008378 (galactosyltransferase activity); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF05637 (Glyco_transf_34) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012773 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057796776.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057796776.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796776.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796776.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796776.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72908510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr1:72908540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B130,B53,C17,C42 |
Chr1:72908547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B130,B53,C17,C42 |
Chr1:72908567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:72908581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr1:72908584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:72908597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr1:72908612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C30,C65 |
Chr1:72908677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C59 |
Chr1:72908703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr1:72908761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C50 |
Chr1:72909696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796776.1PF05637
Glyco_transf_34 93-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796776.1 |
Pfam | PF05637 |
Glyco_transf_34 | Family | 93 | 355 | 4.2e-50 | 171.4 | galactosyl transferase GMA12/MNN10 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。