当前解析结果
SmilChr02G000419| 统一新 Gene ID | SmilChr02G000419 |
|---|---|
| 名称 | SmilChr02G000419 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 5319783 - 5321495 / - |
| NCBI Gene ID | LOC131012803 |
|---|---|
| GeneID | 131012803 |
| locus_tag | - |
| NCBI Name | LOC131012803 |
| 原始查询 | LOC131012803 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=36.3; qcov=0.775; evalue=1.4e-27; confidence=medium |
| Rice | Os08g0125300- identity=38.6; qcov=0.965; evalue=1.58e-39; confidence=medium |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012803 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796788.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057796788.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796788.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796788.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796788.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:5320904 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C22 |
Chr2:5320904 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C22 |
Chr2:5321107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C13 |
Chr2:5321129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B51,C26,C6,C79 |
Chr2:5321167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr2:5321233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,C87 |
Chr2:5321300 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C16,C41 |
Chr2:5321300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C41 |
Chr2:5321380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:5321423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:5321431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr2:5321488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,C23,C55 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。