当前解析结果
SmilChr01G005669| 统一新 Gene ID | SmilChr01G005669 |
|---|---|
| 名称 | SmilChr01G005669 |
| 描述 | uncharacterized SmilChr01G005669 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72981162 - 72982111 / - |
| NCBI Gene ID | LOC131012808 |
|---|---|
| GeneID | 131012808 |
| locus_tag | - |
| NCBI Name | LOC131012808 |
| 原始查询 | LOC131012808 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0156200; species=rice; confidence=low |
| 产物 | hit=Os12g0156200; species=rice; confidence=low |
| Arabidopsis | AT2G17920 (AT2G17920)nucleic acid binding / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:816302] identity=24.5; qcov=0.757; evalue=4.6e-16; confidence=weak |
| Rice | Os12g0156200- identity=28.3; qcov=0.682; evalue=9.69e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14111 (DUF4283); PF14392 (zf-CCHC_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012808 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796794.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057796794.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057796794.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796794.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72981172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C50 |
Chr1:72981316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B48,C17,C60,C73 |
Chr1:72981345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:72981363 |
C |
T |
EMS_canonical_SNV | stop_gained | 62 | A14,A15,A16,A18,A7,A9,B100,B103,B105,B109,B110,B114,B120,B123,B125,B127,B132,B14,B18,B28,B30,B31,B32,B34,B41,B59,B60,B63,B72,B73,B79,B82,B83,B85,B86,B9,B90,B91,B92,B95,C12,C13,C14,C15,C18,C20,C21,C30,C34,C37,C39,C49,C52,C54,C57,C63,C70,C77,C83,C84,D7,D9 |
Chr1:72981375 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | C79,C82 |
Chr1:72981375 |
GC |
G |
1bp_deletion | CDS_variant | 2 | C79,C82 |
Chr1:72981376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B40,B54,D11 |
Chr1:72981378 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | C79,C82 |
Chr1:72981378 |
AG |
A |
1bp_deletion | CDS_variant | 2 | C79,C82 |
Chr1:72981383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B40,B54,D11 |
Chr1:72981386 |
GCT |
G |
2bp_deletion | frameshift_variant | 4 | A24,B40,B54,D11 |
Chr1:72981386 |
GCT |
G |
2bp_deletion | CDS_variant | 4 | A24,B40,B54,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796794.1PF14111
DUF4283 30-106 aa
PF14392
zf-CCHC_4 170-217 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796794.1 |
Pfam | PF14111 |
DUF4283 | Domain | 30 | 106 | 1.3e-17 | 64.0 | Domain of unknown function (DUF4283) |
XP_057796794.1 |
Pfam | PF14392 |
zf-CCHC_4 | Domain | 170 | 217 | 1.6e-19 | 70.0 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。