当前解析结果
SmilChr01G005670| 统一新 Gene ID | SmilChr01G005670 |
|---|---|
| 名称 | SmilChr01G005670 |
| 描述 | uncharacterized SmilChr01G005670 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72983141 - 72987076 / + |
| NCBI Gene ID | LOC131012817 |
|---|---|
| GeneID | 131012817 |
| locus_tag | - |
| NCBI Name | LOC131012817 |
| 原始查询 | LOC131012817 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0357300; species=rice; confidence=low |
| 产物 | hit=Os04g0357300; species=rice; confidence=low |
| Arabidopsis | AT3G51700 (AT3G51700)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824333] identity=33.3; qcov=0.173; evalue=4.73e-12; confidence=weak |
| Rice | Os04g0357300- identity=39.4; qcov=0.368; evalue=1.15e-38; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012817 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796796.1 |
| 2 | Telomere | 端粒 | 0.40000 | XP_057796796.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057796796.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796796.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796796.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72983189 |
GA |
G |
1bp_deletion | frameshift_variant | 103 | A1,A15,A18,A19,A2,A20,A21,A7,A8,A9,B1,B102,B105,B107,B108,B109,B111,B112,B12,B121,B122,B123,B125,B13,B131,B132,B134,B138,B140,B16,B18,B19,B21,B23,B24,B25,B28,B3,B35,B38,B39,B4,B41,B44,B46,B5,B50,B55,B6,B60,B61,B65,B67,B72,B74,B77,B80,B81,B85,B86,B87,B9,B90,B91,B94,B97,C1,C11,C13,C20,C26,C28,C39,C4,C42,C47,C48,C49,C5,C51,C52,C55,C56,C58,C61,C63,C64,C66,C69,C70,C72,C73,C75,C78,C8,C80,C82,C83,C87,D11,D3,D7,D8 |
Chr1:72983198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:72983235 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B15,B73 |
Chr1:72983235 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B15,B73 |
Chr1:72983239 |
G |
GT |
1bp_insertion | frameshift_variant | 4 | B100,B47,C41,D3 |
Chr1:72983239 |
G |
GT |
1bp_insertion | CDS_variant | 4 | B100,B47,C41,D3 |
Chr1:72983254 |
G |
GTA |
2bp_insertion | frameshift_variant | 4 | B127,B137,C38,C79 |
Chr1:72983254 |
G |
GTA |
2bp_insertion | CDS_variant | 4 | B127,B137,C38,C79 |
Chr1:72983290 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B71,B89 |
Chr1:72983290 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B71,B89 |
Chr1:72983294 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A10,B105,B18,B23,B41,B44,B85,B87,B94,C58,C78,D6 |
Chr1:72983384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,A21,B95,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796796.1PF05970
PIF1 383-534 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796796.1 |
Pfam | PF05970 |
PIF1 | Family | 383 | 534 | 1.6e-62 | 211.8 | PIF1-like helicase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。