当前解析结果
SmilChr02G000467| 统一新 Gene ID | SmilChr02G000467 |
|---|---|
| 名称 | SmilChr02G000467 |
| 描述 | uncharacterized SmilChr02G000467 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 6297501 - 6300239 / - |
| NCBI Gene ID | LOC131012839 |
|---|---|
| GeneID | 131012839 |
| locus_tag | - |
| NCBI Name | LOC131012839 |
| 原始查询 | LOC131012839 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820741]; symbol=AT3G15110; hit=AT3G15110; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820741]; symbol=AT3G15110; hit=AT3G15110; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G15110 (AT3G15110)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820741] identity=55.3; qcov=0.896; evalue=1.51e-86; confidence=high |
| Rice | Os02g0307800- identity=64.4; qcov=0.647; evalue=2.79e-67; confidence=high |
| GO | GO:0009535 (chloroplast thylakoid membrane) |
| KEGG | - |
| Pfam | PF11282 (DUF3082) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012839 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057796809.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057796809.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057796809.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.80000 | XP_057796809.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057796809.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:6297847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr2:6297859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:6298703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:6298706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C74,D2 |
Chr2:6299793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr2:6299942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:6300084 |
T |
TAA |
2bp_insertion | frameshift_variant | 167 | A1,A11,A13,A15,A16,A18,A2,A20,A21,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B100,B101,B102,B103,B104,B108,B112,B115,B118,B120,B121,B124,B125,B127,B128,B131,B132,B134,B136,B14,B140,B18,B19,B2,B20,B22,B23,B24,B26,B27,B3,B30,B33,B34,B37,B40,B41,B42,B43,B46,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B65,B68,B69,B7,B70,B72,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C12,C13,C14,C18,C2,C21,C23,C25,C26,C32,C35,C37,C4,C42,C43,C44,C45,C46,C5,C50,C51,C52,C53,C54,C55,C57,C58,C60,C61,C62,C63,C64,C65,C66,C68,C69,C71,C72,C73,C74,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,D10,D11,D2,D4,D6,D8,D9 |
Chr2:6300145 |
CAT |
C |
2bp_deletion | frameshift_variant | 169 | A1,A11,A13,A15,A16,A18,A2,A20,A21,A23,A24,A25,A3,A4,A5,A6,A9,B1,B100,B101,B103,B104,B108,B112,B115,B118,B120,B121,B124,B125,B127,B128,B131,B132,B134,B136,B14,B140,B16,B18,B19,B2,B20,B22,B23,B24,B26,B27,B3,B30,B32,B33,B34,B37,B40,B41,B42,B43,B46,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B65,B68,B69,B7,B70,B72,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C12,C13,C14,C18,C2,C21,C23,C25,C26,C32,C35,C36,C37,C4,C42,C43,C44,C45,C46,C5,C50,C51,C52,C53,C54,C55,C57,C58,C60,C61,C62,C63,C64,C65,C66,C68,C69,C70,C71,C72,C73,C74,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,D10,D11,D2,D4,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796809.1PF11282
DUF3082 197-274 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796809.1 |
Pfam | PF11282 |
DUF3082 | Family | 197 | 274 | 6e-29 | 100.8 | Protein of unknown function (DUF3082) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。