Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000471`

染色体: Chr02 坐标: 6376046-6381744 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000471`
名称	SmilChr02G000471
描述	uncharacterized exonuclease domain-containing protein At3g15140-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	6376046 - 6381744 / `-`

ID 对照

NCBI Gene ID	`LOC131012844`
GeneID	`131012844`
locus_tag	`-`
NCBI Name	`LOC131012844`
原始查询	`LOC131012844`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820745]; symbol=AT3G15140; hit=AT3G15140; species=arabidopsis; confidence=high
产物	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820745]; symbol=AT3G15140; hit=AT3G15140; species=arabidopsis; confidence=high
Arabidopsis	`AT3G15140` (AT3G15140) Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820745] identity=61.6; qcov=0.801; evalue=2.41e-126; confidence=high
Rice	`Os06g0353400` - identity=55.4; qcov=0.277; evalue=3.03e-31; confidence=weak
GO	GO:0000175 (3'-5'-RNA exonuclease activity); GO:0000467 (exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003676 (nucleic acid binding)
KEGG	-
Pfam	PF00929 (RNase_T)
InterPro	-
eggNOG	-
NR	GeneID:131012844

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796815.1`
2	Mitochondrion	线粒体	0.20000	`XP_057796815.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057796815.1`
4	Nucleus	细胞核	0.00000	`XP_057796815.1`
5	Chromosome	染色体	0.00000	`XP_057796815.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:6376647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr2:6376725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:6377116`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B27
`Chr2:6377116`	`G`	`GA`	1bp_insertion	CDS_variant	1	B27
`Chr2:6378097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B93
`Chr2:6378101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr2:6379041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,C71
`Chr2:6380316`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B122
`Chr2:6380338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C64,C66
`Chr2:6380673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B69,B9,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796815.1

332 aa

166

332

RNase_T

PF00929 RNase_T 123-300 aa

XP_057796816.1

332 aa

166

332

RNase_T

PF00929 RNase_T 123-300 aa

XP_057796818.1

332 aa

166

332

RNase_T

PF00929 RNase_T 123-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796815.1`	Pfam	`PF00929`	RNase_T	Domain	123	300	6.4e-09	37.3	Exonuclease
`XP_057796816.1`	Pfam	`PF00929`	RNase_T	Domain	123	300	6.4e-09	37.3	Exonuclease
`XP_057796818.1`	Pfam	`PF00929`	RNase_T	Domain	123	300	6.4e-09	37.3	Exonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940835.1
GATAGTCTTCGTGCTCTCCCAGAAAAAAGGCTTTTGTTGAGATAGCCCTTTGTTGACAACTTAATAAATTAATAATAGCACTCTGCCAAAAAAAACTCTGCTTCGTGCTTTCCAGTTTTGAGTCAGTTGCTTCGTGTTGCCAGAAAAAGGCTCCGCCTGCAACCCCCATCTCCGGCGAAATCGTCGCCGGCGTGTCGCCTCCGACCCTCGCCTCTCACCCCCTCTCTACTTCTCTCTCTTTCTTTCAATTCTCTCTGACG...

XM_057940833.1
GATAGTCTTCGTGCTCTCCCAGAAAAAAGGCTTTTGTTGAGATAGCCCTTTGTTGACAACTTAATAAATTAATAATAGCACTCTGCCAAAAAAAACTCTGCTTCGTGCTTTCCAGTTTTGAGTCAGTTGCTTCGTGTTGCCAGAAAAAGGCTCCGCCTGCAACCCCCATCTCCGGCGAAATCGTCGCCGGCGTGTCGCCTCCGACCCTCGCCTCTCACCCCCTCTCTACTTCTCTCTCTTTCTTTCAATTCTCTCTGACG...

CDS

3 records

下载 CDS FASTA

LOC131012844
ATGGCGACTTGGAGCCATCCTTTGCTTCGCCGGGCCCCTCTTTTCTCTCCTCATCCGCCGCCCTTTCTCCACTTCCCCTCGCTCTCCACTTCCATTAATCAACACAAATTCAAACGTTCGTTCATGCGCTGCTATTCTTCCATGGAAGAATCCGCACCGTCTACTCTCACCCAATCAGAATTTCCAAGAATGGGCAGAAATTCCAACTGGAAGCCCATGTGCTTGTACTACACTCAAGGTAAATGCACCAAGATGGATGA...

Protein

3 records

下载 Protein FASTA

XP_057796815.1
MATWSHPLLRRAPLFSPHPPPFLHFPSLSTSINQHKFKRSFMRCYSSMEESAPSTLTQSEFPRMGRNSNWKPMCLYYTQGKCTKMDDSLHVNKFCHSCSIKLGDRVPEFKNLRSQKFDYFLVLDLEGKVEILEFPVLLFDAKTLDVVDVFHRFVRPTKMTEKRINEYIEGKYGAFGVDRVWHDTAITFHEVIEQFETWLRMERNGGSRLWTEEGDGRLNRAAFVTCGNWDLKTKVPQQCEVSKMEIPPYIMEWINLKDIY...

XP_057796816.1
MATWSHPLLRRAPLFSPHPPPFLHFPSLSTSINQHKFKRSFMRCYSSMEESAPSTLTQSEFPRMGRNSNWKPMCLYYTQGKCTKMDDSLHVNKFCHSCSIKLGDRVPEFKNLRSQKFDYFLVLDLEGKVEILEFPVLLFDAKTLDVVDVFHRFVRPTKMTEKRINEYIEGKYGAFGVDRVWHDTAITFHEVIEQFETWLRMERNGGSRLWTEEGDGRLNRAAFVTCGNWDLKTKVPQQCEVSKMEIPPYIMEWINLKDIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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