当前解析结果
SmilChr02G000526| 统一新 Gene ID | SmilChr02G000526 |
|---|---|
| 名称 | SmilChr02G000526 |
| 描述 | pectin acetylesterase 8-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7241808 - 7243071 / + |
| NCBI Gene ID | LOC131012881 |
|---|---|
| GeneID | 131012881 |
| locus_tag | - |
| NCBI Name | LOC131012881 |
| 原始查询 | LOC131012881 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectin acetylesterase 8-like |
| 产物 | pectin acetylesterase 8-like |
| Arabidopsis | AT4G19420 (AT4G19420)Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827683] identity=47.7; qcov=0.933; evalue=1.58e-55; confidence=high |
| Rice | Os01g0892500- identity=45.1; qcov=0.933; evalue=1.95e-56; confidence=high |
| GO | GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization) |
| KEGG | - |
| Pfam | PF03283 (PAE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057796851.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796851.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796851.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796851.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796851.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7242174 |
G |
GCA |
2bp_insertion | frameshift_variant | 22 | A5,A6,B104,B106,B118,B15,B39,B40,B42,B59,B78,B81,B85,B88,B98,B99,C14,C28,C32,C4,C62,C72 |
Chr2:7242335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr2:7242336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:7242341 |
A |
AG |
1bp_insertion | frameshift_variant | 6 | B39,B52,B60,C34,C39,C47 |
Chr2:7242349 |
GC |
G |
1bp_deletion | frameshift_variant | 6 | B39,B52,B60,C34,C39,C47 |
Chr2:7242359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C82 |
Chr2:7242382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B39,B55,C3,C33,D3 |
Chr2:7242464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:7242554 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A8,B26,B35,B8,B94,C15,C9,D9 |
Chr2:7242579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:7242765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,A24,B91,C61 |
Chr2:7242781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B140,B48,B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796851.1PF03283
PAE 13-208 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796851.1 |
Pfam | PF03283 |
PAE | Family | 13 | 208 | 7.2e-66 | 223.5 | Pectinacetylesterase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。