当前解析结果
SmilChr02G000534| 统一新 Gene ID | SmilChr02G000534 |
|---|---|
| 名称 | SmilChr02G000534 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7369302 - 7370581 / + |
| NCBI Gene ID | LOC131012887 |
|---|---|
| GeneID | 131012887 |
| locus_tag | - |
| NCBI Name | LOC131012887 |
| 原始查询 | LOC131012887 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT5G20480 (EFR)EF-TU receptor [Source:NCBI gene (formerly Entrezgene);Acc:832170] identity=32.5; qcov=1.16; evalue=1.74e-60; confidence=low |
| Rice | Os11g0559200 (Xa21*)- identity=36.9; qcov=1.05; evalue=1.1e-65; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012887 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796856.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796856.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796856.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796856.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796856.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7369360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B64 |
Chr2:7369384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B25,B54 |
Chr2:7369428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B23,B53,B71,B80,C6 |
Chr2:7369444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr2:7369452 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | C3,C74 |
Chr2:7369452 |
CA |
C |
1bp_deletion | CDS_variant | 2 | C3,C74 |
Chr2:7369456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C74 |
Chr2:7369458 |
AAC |
A |
2bp_deletion | frameshift_variant | 2 | C3,C74 |
Chr2:7369458 |
AAC |
A |
2bp_deletion | CDS_variant | 2 | C3,C74 |
Chr2:7369477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B129,C63 |
Chr2:7369556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:7369672 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796856.1PF08263
LRRNT_2 33-73 aa
PF13855
LRR_8 125-185 aa
PF00560
LRR_1 150-172 aa
PF00560
LRR_1 174-196 aa
PF00560
LRR_1 271-293 aa
PF00560
LRR_1 295-317 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796856.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 33 | 73 | 1.4e-09 | 38.8 | Leucine rich repeat N-terminal domain |
XP_057796856.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 125 | 185 | 1.2e-25 | 89.8 | Leucine rich repeat |
XP_057796856.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 172 | 5.2e-32 | 103.7 | Leucine Rich Repeat |
XP_057796856.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 174 | 196 | 5.2e-32 | 103.7 | Leucine Rich Repeat |
XP_057796856.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 271 | 293 | 5.2e-32 | 103.7 | Leucine Rich Repeat |
XP_057796856.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 295 | 317 | 5.2e-32 | 103.7 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。