当前解析结果
SmilChr01G005732| 统一新 Gene ID | SmilChr01G005732 |
|---|---|
| 名称 | SmilChr01G005732 |
| 描述 | receptor-like protein 9DC3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73457894 - 73458595 / + |
| NCBI Gene ID | LOC131012913 |
|---|---|
| GeneID | 131012913 |
| locus_tag | - |
| NCBI Name | LOC131012913 |
| 原始查询 | LOC131012913 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 9DC3 |
| 产物 | receptor-like protein 9DC3 |
| Arabidopsis | AT5G40170 (RLP54)receptor like protein 54 [Source:NCBI gene (formerly Entrezgene);Acc:834015] identity=41.9; qcov=0.82; evalue=2.09e-41; confidence=medium |
| Rice | Os01g0162800- identity=50; qcov=0.781; evalue=1.21e-44; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012913 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796871.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057796871.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796871.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796871.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796871.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73457962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr1:73457987 |
C |
T |
EMS_canonical_SNV | stop_gained | 38 | A2,A4,A8,B115,B118,B122,B128,B15,B41,B56,B59,B6,B64,B65,B69,B71,B77,B79,B84,B9,B96,C12,C13,C20,C24,C27,C3,C30,C33,C35,C37,C39,C47,C51,C55,C56,C62,C73 |
Chr1:73458099 |
AC |
A |
1bp_deletion | frameshift_variant | 41 | A18,A9,B10,B102,B103,B107,B109,B111,B115,B124,B125,B127,B13,B137,B140,B20,B22,B32,B33,B57,B66,B7,B73,B78,B88,B90,B92,C12,C16,C21,C23,C29,C43,C44,C48,C51,C53,C59,C6,C7,D8 |
Chr1:73458144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr1:73458159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C81 |
Chr1:73458199 |
TGG |
T |
2bp_deletion | frameshift_variant | 1 | B122 |
Chr1:73458199 |
TGG |
T |
2bp_deletion | CDS_variant | 1 | B122 |
Chr1:73458213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,B99 |
Chr1:73458222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B80,C80,D6,D7 |
Chr1:73458223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C2 |
Chr1:73458225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr1:73458269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C41,C54,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796871.1PF13855
LRR_8 41-77 aa
PF00560
LRR_1 44-64 aa
PF13516
LRR_6 65-76 aa
PF00560
LRR_1 66-87 aa
PF13516
LRR_6 91-102 aa
PF00560
LRR_1 91-112 aa
PF00560
LRR_1 115-132 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796871.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 41 | 77 | 9.5e-11 | 42.0 | Leucine rich repeat |
XP_057796871.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 44 | 64 | 5.8e-16 | 55.9 | Leucine Rich Repeat |
XP_057796871.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 65 | 76 | 1.6e-06 | 28.4 | Leucine Rich repeat |
XP_057796871.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 66 | 87 | 5.8e-16 | 55.9 | Leucine Rich Repeat |
XP_057796871.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 91 | 102 | 1.6e-06 | 28.4 | Leucine Rich repeat |
XP_057796871.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 91 | 112 | 5.8e-16 | 55.9 | Leucine Rich Repeat |
XP_057796871.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 115 | 132 | 5.8e-16 | 55.9 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。