当前解析结果
SmilChr02G000593| 统一新 Gene ID | SmilChr02G000593 |
|---|---|
| 名称 | SmilChr02G000593 |
| 描述 | intermembrane lipid transfer protein VPS13 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8493478 - 8565262 / + |
| NCBI Gene ID | LOC131012928 |
|---|---|
| GeneID | 131012928 |
| locus_tag | - |
| NCBI Name | LOC131012928 |
| 原始查询 | LOC131012928 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | intermembrane lipid transfer protein VPS13 |
| 产物 | intermembrane lipid transfer protein VPS13 |
| Arabidopsis | AT5G24740 (AT5G24740)vacuolar protein sorting-associated protein, putative (DUF1162) [Source:NCBI gene (formerly Entrezgene);Acc:832543] identity=41.2; qcov=1.04; evalue=0; confidence=medium |
| Rice | Os08g0116566- identity=48.6; qcov=0.129; evalue=4.37e-101; confidence=weak |
| GO | GO:0006623 (protein targeting to vacuole); GO:0019898 (extrinsic component of membrane); GO:0045053 (protein retention in Golgi apparatus) |
| KEGG | - |
| Pfam | PF12624 (VPS13_N); PF25036 (VPS13_VAB); PF25037 (VPS13_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012928 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasmic vesicle | 细胞质囊泡 | 0.80000 | XP_057796878.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057796878.1 |
| 3 | Endosome | 内体 | 0.60000 | XP_057796878.1 |
| 4 | Autophagic vesicle | Autophagic vesicle | 0.40000 | XP_057796883.1 |
| 5 | Autophagosome | Autophagosome | 0.40000 | XP_057796883.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8532430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,D3 |
Chr2:8536927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:8538960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:8539036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C53,C64,C66 |
Chr2:8539060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:8540253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,C32,C68 |
Chr2:8540292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B40,C78,D5 |
Chr2:8542190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B79,C39 |
Chr2:8544095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C53,C64,C66 |
Chr2:8545063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B40,C78,D5 |
Chr2:8547763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:8548823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796878.1PF12624
VPS13_N 1-669 aa
PF25036
VPS13_VAB 2055-2659 aa
PF25037
VPS13_C 3247-3316 aa
XP_057796879.1PF12624
VPS13_N 1-669 aa
PF25036
VPS13_VAB 2055-2659 aa
PF25037
VPS13_C 3247-3316 aa
XP_057796880.1PF12624
VPS13_N 1-669 aa
PF25036
VPS13_VAB 2055-2659 aa
PF25037
VPS13_C 3247-3316 aa
XP_057796881.1PF12624
VPS13_N 11-571 aa
PF25036
VPS13_VAB 1962-2561 aa
PF25037
VPS13_C 3149-3218 aa
XP_057796882.1PF12624
VPS13_N 3-389 aa
PF25036
VPS13_VAB 1774-2379 aa
PF25037
VPS13_C 2967-3036 aa
XP_057796883.1PF25036
VPS13_VAB 1430-2034 aa
PF25037
VPS13_C 2622-2691 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796878.1 |
Pfam | PF12624 |
VPS13_N | Repeat | 1 | 669 | 2.7e-87 | 294.5 | VPS13-like family N-terminal region |
XP_057796878.1 |
Pfam | PF25036 |
VPS13_VAB | Domain | 2055 | 2659 | 2.3e-34 | 119.6 | Vacuolar-sorting associated protein 13, adaptor binding domain |
XP_057796878.1 |
Pfam | PF25037 |
VPS13_C | Domain | 3247 | 3316 | 2.6e-06 | 28.1 | Intermembrane lipid transfer protein VPS13, C-terminal |
XP_057796879.1 |
Pfam | PF12624 |
VPS13_N | Repeat | 1 | 669 | 2.7e-87 | 294.5 | VPS13-like family N-terminal region |
XP_057796879.1 |
Pfam | PF25036 |
VPS13_VAB | Domain | 2055 | 2659 | 2.3e-34 | 119.6 | Vacuolar-sorting associated protein 13, adaptor binding domain |
XP_057796879.1 |
Pfam | PF25037 |
VPS13_C | Domain | 3247 | 3316 | 2.6e-06 | 28.1 | Intermembrane lipid transfer protein VPS13, C-terminal |
XP_057796880.1 |
Pfam | PF12624 |
VPS13_N | Repeat | 1 | 669 | 2.7e-87 | 294.5 | VPS13-like family N-terminal region |
XP_057796880.1 |
Pfam | PF25036 |
VPS13_VAB | Domain | 2055 | 2659 | 2.3e-34 | 119.6 | Vacuolar-sorting associated protein 13, adaptor binding domain |
XP_057796880.1 |
Pfam | PF25037 |
VPS13_C | Domain | 3247 | 3316 | 2.6e-06 | 28.1 | Intermembrane lipid transfer protein VPS13, C-terminal |
XP_057796881.1 |
Pfam | PF12624 |
VPS13_N | Repeat | 11 | 571 | 5.9e-52 | 177.4 | VPS13-like family N-terminal region |
XP_057796881.1 |
Pfam | PF25036 |
VPS13_VAB | Domain | 1962 | 2561 | 2.1e-34 | 119.7 | Vacuolar-sorting associated protein 13, adaptor binding domain |
XP_057796881.1 |
Pfam | PF25037 |
VPS13_C | Domain | 3149 | 3218 | 2.6e-06 | 28.1 | Intermembrane lipid transfer protein VPS13, C-terminal |
XP_057796882.1 |
Pfam | PF12624 |
VPS13_N | Repeat | 3 | 389 | 9.1e-33 | 113.9 | VPS13-like family N-terminal region |
XP_057796882.1 |
Pfam | PF25036 |
VPS13_VAB | Domain | 1774 | 2379 | 1.6e-34 | 120.1 | Vacuolar-sorting associated protein 13, adaptor binding domain |
XP_057796882.1 |
Pfam | PF25037 |
VPS13_C | Domain | 2967 | 3036 | 2.5e-06 | 28.1 | Intermembrane lipid transfer protein VPS13, C-terminal |
XP_057796883.1 |
Pfam | PF25036 |
VPS13_VAB | Domain | 1430 | 2034 | 9.5e-35 | 120.8 | Vacuolar-sorting associated protein 13, adaptor binding domain |
XP_057796883.1 |
Pfam | PF25037 |
VPS13_C | Domain | 2622 | 2691 | 2.3e-06 | 28.2 | Intermembrane lipid transfer protein VPS13, C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。