Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000607`

染色体: Chr02 坐标: 8839471-8846778 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000607`
名称	SmilChr02G000607
描述	uncharacterized SmilChr02G000607
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	8839471 - 8846778 / `+`

ID 对照

NCBI Gene ID	`LOC131012938`
GeneID	`131012938`
locus_tag	`-`
NCBI Name	`LOC131012938`
原始查询	`LOC131012938`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Putative thiol-disulfide oxidoreductase DCC [Source:NCBI gene (formerly Entrezgene);Acc:10723023]; symbol=AT1G24095; hit=AT1G24095; species=arabidopsis; confidence=medium
产物	Putative thiol-disulfide oxidoreductase DCC [Source:NCBI gene (formerly Entrezgene);Acc:10723023]; symbol=AT1G24095; hit=AT1G24095; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G24095` (AT1G24095) Putative thiol-disulfide oxidoreductase DCC [Source:NCBI gene (formerly Entrezgene);Acc:10723023] identity=63.5; qcov=0.85; evalue=6.05e-40; confidence=medium
Rice	`-` -
GO	GO:0015035 (protein-disulfide reductase activity)
KEGG	-
Pfam	PF04134 (DCC1-like)
InterPro	-
eggNOG	-
NR	GeneID:131012938

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057796895.1`
2	Cytoplasm	细胞质	0.40000	`XP_057796893.1`
3	Mitochondrion membrane	线粒体膜	0.40000	`XP_057796895.1`
4	Endoplasmic reticulum	内质网	0.40000	`XP_057796895.1`
5	Nucleus	细胞核	0.20000	`XP_057796893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:8841410`	`AAC`	`A`	2bp_deletion	frameshift_variant	5	B121,B138,B63,C48,C80
`Chr2:8841410`	`AAC`	`A`	2bp_deletion	CDS_variant	5	B121,B138,B63,C48,C80
`Chr2:8841435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B77,B9,B93
`Chr2:8841442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:8841445`	`CGG`	`C`	2bp_deletion	frameshift_variant	19	A25,B110,B112,B125,B134,B3,B31,B32,B45,B50,B77,B82,C20,C29,C38,C60,C63,C79,C82
`Chr2:8841460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:8841461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B77,B9,B93
`Chr2:8841464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr2:8841466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:8841476`	`CT`	`C`	1bp_deletion	frameshift_variant	79	A10,A13,A18,A20,A4,A5,A9,B101,B103,B104,B106,B113,B117,B124,B13,B132,B139,B15,B17,B21,B22,B23,B26,B29,B30,B35,B36,B37,B43,B5,B52,B53,B56,B58,B59,B67,B69,B71,B74,B75,B8,B85,B9,B91,B96,B97,B98,B99,C1,C10,C14,C17,C19,C27,C28,C33,C36,C40,C45,C51,C58,C6,C61,C62,C70,C71,C72,C77,C79,C8,C81,C83,C84,C86,C87,D2,D3,D4,D8
`Chr2:8841481`	`CAT`	`C`	2bp_deletion	frameshift_variant	1	B69
`Chr2:8841481`	`CAT`	`C`	2bp_deletion	CDS_variant	1	B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796893.1

168 aa

168

DCC1-like

PF04134 DCC1-like 73-167 aa

XP_057796894.1

168 aa

168

DCC1-like

PF04134 DCC1-like 73-167 aa

XP_057796895.1

113 aa

113

DCC1-like

PF04134 DCC1-like 17-112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796893.1`	Pfam	`PF04134`	DCC1-like	Family	73	167	2.7e-14	55.1	DCC1-like thiol-disulfide oxidoreductase
`XP_057796894.1`	Pfam	`PF04134`	DCC1-like	Family	73	167	2.7e-14	55.1	DCC1-like thiol-disulfide oxidoreductase
`XP_057796895.1`	Pfam	`PF04134`	DCC1-like	Family	17	112	9.8e-15	56.5	DCC1-like thiol-disulfide oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009097530.1
ACACTTTTTTCTCTCTCACTTTTCCTTTCTTCTTTACACGCTCTCTCTCTCTCTTTTCGCTCCCTCTTTCTGCGTCTCTCAGTAGCTCTCGCTCTCCGGTGGACGTCACCGGTCCTCGCCGCCTCTGGTGCGGCGCGGCCGGCCCCTCTCTTCCCCCTCTATTTTCTTCCCTTCCCTACATCTAAATCCCCAAATTAAAAAAAATCTAATTCCTAGGGTTTCTACCTCCCTTCTTCCCCTCTGGAATTCGTTTCTCCGGC...

XM_057940910.1
AACACTTTTTTCTCTCTCACTTTTCCTTTCTTCTTTACACGCTCTCTCTCTCTCTTTTCGCTCCCTCTTTCTGCGTCTCTCAGTAGCTCTCGCTCTCCGGTGGACGTCACCGGTCCTCGCCGCCTCTGGTGCGGCGCGGCCGGCCCCTCTCTTCCCCCTCTATTTTCTTCCCTTCCCTACATCTAAATCCCCAAATTAAAAAAAATCTAATTCCTAGGGTTTCTACCTCCCTTCTTCCCCTCTGGAATTCGTTTCTCCGG...

CDS

3 records

下载 CDS FASTA

LOC131012938
ATGAATATACAAGTCCGTGGGCGCAAACGGAGCTCAAATCGAATGTCGGACGAAAGAGAACGGATGTCAAGAAGTCCGCGTGTCGCAAAGACTACTCATCATGCAAGATCGCTCTCACTCTCTCTCTGTCGTCCTCACCGCCCCGCCGCCGCCTTCATCGTCCGCAATAGAGTTTGGTCTTTCGTCGCCCACCACCACCCCCATATCGACGTATCAGGAGTGAAATGGATCATCAGGGCTCACAAAGATAAGAAAATAAG...

Protein

3 records

下载 Protein FASTA

XP_057796893.1
MNIQVRGRKRSSNRMSDERERMSRSPRVAKTTHHARSLSLSLCRPHRPAAAFIVRNRVWSFVAHHHPHIDVSGVKWIIRAHKDKKIRLCCVQSKAAEPYMKVCGVDREDVLRHFLFVEAPDSYHQGFAAALRVCSYFPKPFFVLSALMVVPAPLRDAVYDYVAKRRYD

XP_057796894.1
MNIQVRGRKRSSNRMSDERERMSRSPRVAKTTHHARSLSLSLCRPHRPAAAFIVRNRVWSFVAHHHPHIDVSGVKWIIRAHKDKKIRLCCVQSKAAEPYMKVCGVDREDVLRHFLFVEAPDSYHQGFAAALRVCSYFPKPFFVLSALMVVPAPLRDAVYDYVAKRRYD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器