当前解析结果
SmilChr02G000608| 统一新 Gene ID | SmilChr02G000608 |
|---|---|
| 名称 | SmilChr02G000608 |
| 描述 | uncharacterized SmilChr02G000608 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8871483 - 8876780 / - |
| NCBI Gene ID | LOC131012940 |
|---|---|
| GeneID | 131012940 |
| locus_tag | - |
| NCBI Name | LOC131012940 |
| 原始查询 | LOC131012940 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Peptidase S24/S26A/S26B/S26C family protein [Source:NCBI gene (formerly Entrezgene);Acc:820050]; symbol=AT3G08980; hit=AT3G08980; species=arabidopsis; confidence=high |
| 产物 | Peptidase S24/S26A/S26B/S26C family protein [Source:NCBI gene (formerly Entrezgene);Acc:820050]; symbol=AT3G08980; hit=AT3G08980; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G08980 (AT3G08980)Peptidase S24/S26A/S26B/S26C family protein [Source:NCBI gene (formerly Entrezgene);Acc:820050] identity=61.8; qcov=0.952; evalue=2.16e-65; confidence=high |
| Rice | Os04g0165600 (OsSigP3)- identity=52.2; qcov=0.952; evalue=7.03e-53; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006465 (GO:0006465); GO:0006627 (GO:0006627); GO:0016020 (membrane); GO:0033108 (mitochondrial respiratory chain complex assembly); GO:0042720 (mitochondrial inner membrane peptidase complex) |
| KEGG | smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF10502 (Peptidase_S26) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012940 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057796897.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057796897.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057796897.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796897.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796897.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8875364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr2:8875367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B30,C33 |
Chr2:8875547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:8875549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:8875552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:8875595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr2:8875603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796897.1PF10502
Peptidase_S26 8-102 aa
PF10502
Peptidase_S26 102-149 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796897.1 |
Pfam | PF10502 |
Peptidase_S26 | Domain | 8 | 102 | 6.5e-24 | 85.5 | Signal peptidase, peptidase S26 |
XP_057796897.1 |
Pfam | PF10502 |
Peptidase_S26 | Domain | 102 | 149 | 6.5e-24 | 85.5 | Signal peptidase, peptidase S26 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。