当前解析结果
SmilChr02G000634| 统一新 Gene ID | SmilChr02G000634 |
|---|---|
| 名称 | SmilChr02G000634 |
| 描述 | uncharacterized SmilChr02G000634 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 9601689 - 9604337 / + |
| NCBI Gene ID | LOC131012948 |
|---|---|
| GeneID | 131012948 |
| locus_tag | - |
| NCBI Name | LOC131012948 |
| 原始查询 | LOC131012948 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0122100; species=rice; confidence=medium |
| 产物 | hit=Os09g0122100; species=rice; confidence=medium |
| Arabidopsis | AT5G41980 (AT5G41980)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=32.7; qcov=1.03; evalue=1.12e-55; confidence=low |
| Rice | Os09g0122100- identity=42.4; qcov=1.01; evalue=1.94e-83; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012948 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796913.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057796913.1 |
| 3 | Telomere | 端粒 | 0.40000 | XP_057796913.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057796913.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796913.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:9603009 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A18,B104,B40,C8,D1 |
Chr2:9603009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B104,B40,C8,D1 |
Chr2:9603024 |
A |
ACT |
2bp_insertion | frameshift_variant | 19 | A11,B100,B126,B129,B134,B137,B43,B51,B62,B66,B7,B72,B79,B9,B91,C50,C52,C61,C7 |
Chr2:9603026 |
G |
GAA |
2bp_insertion | frameshift_variant | 20 | A11,B100,B126,B129,B134,B137,B43,B51,B62,B66,B7,B72,B79,B9,B91,C50,C52,C6,C61,C7 |
Chr2:9603027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr2:9603034 |
G |
GGC |
2bp_insertion | frameshift_variant | 2 | B79,C7 |
Chr2:9603034 |
G |
GGC |
2bp_insertion | CDS_variant | 2 | B79,C7 |
Chr2:9603045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr2:9603051 |
GA |
G |
1bp_deletion | frameshift_variant | 13 | A20,A4,B104,B12,B126,B15,B33,B67,C15,C35,C5,C6,C77 |
Chr2:9603054 |
CA |
C |
1bp_deletion | frameshift_variant | 6 | A14,A3,B5,B61,D10,D4 |
Chr2:9603056 |
AG |
A |
1bp_deletion | frameshift_variant | 8 | A11,B101,B29,B51,B66,C37,C4,C6 |
Chr2:9603059 |
T |
TG |
1bp_insertion | frameshift_variant | 6 | A14,A3,B5,B61,D10,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796913.1PF26138
DUF8040 1-71 aa
PF04827
Plant_tran 95-265 aa
PF01609
DDE_Tnp_1 96-259 aa
PF13359
DDE_Tnp_4 102-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796913.1 |
Pfam | PF26138 |
DUF8040 | Domain | 1 | 71 | 6.9e-19 | 68.2 | Domain of unknown function (DUF8040) |
XP_057796913.1 |
Pfam | PF04827 |
Plant_tran | Family | 95 | 265 | 2.6e-07 | 31.2 | Plant transposon protein |
XP_057796913.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 96 | 259 | 1e-10 | 42.4 | Transposase DDE domain |
XP_057796913.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 102 | 260 | 1.6e-23 | 83.8 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。