当前解析结果
SmilChr02G000002| 统一新 Gene ID | SmilChr02G000002 |
|---|---|
| 名称 | SmilChr02G000002 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 18658 - 21177 / - |
| NCBI Gene ID | LOC131012965 |
|---|---|
| GeneID | 131012965 |
| locus_tag | - |
| NCBI Name | LOC131012965 |
| 原始查询 | LOC131012965 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=39.8; qcov=1.04; evalue=2.92e-153; confidence=medium |
| Rice | Os11g0695000- identity=40; qcov=1.02; evalue=3.25e-163; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012965 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796934.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796934.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796934.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796934.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796934.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:18886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr2:18925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C87 |
Chr2:18926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,B98 |
Chr2:18952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B26,B98 |
Chr2:19182 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C20 |
Chr2:19182 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C20 |
Chr2:19205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B37,B46,B5,B56,B6 |
Chr2:19215 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,D2 |
Chr2:19241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,D2 |
Chr2:19259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B85,C63 |
Chr2:19268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B36,B41 |
Chr2:19458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796934.1PF00560
LRR_1 14-36 aa
PF00560
LRR_1 67-88 aa
PF00560
LRR_1 163-183 aa
PF00560
LRR_1 259-280 aa
PF13855
LRR_8 259-318 aa
PF00560
LRR_1 283-304 aa
PF00560
LRR_1 307-324 aa
PF00069
Pkinase 427-695 aa
PF07714
PK_Tyr_Ser-Thr 429-698 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796934.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 14 | 36 | 1.8e-27 | 90.1 | Leucine Rich Repeat |
XP_057796934.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 67 | 88 | 1.8e-27 | 90.1 | Leucine Rich Repeat |
XP_057796934.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 163 | 183 | 1.8e-27 | 90.1 | Leucine Rich Repeat |
XP_057796934.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 259 | 280 | 1.8e-27 | 90.1 | Leucine Rich Repeat |
XP_057796934.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 259 | 318 | 1.1e-19 | 70.7 | Leucine rich repeat |
XP_057796934.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 283 | 304 | 1.8e-27 | 90.1 | Leucine Rich Repeat |
XP_057796934.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 307 | 324 | 1.8e-27 | 90.1 | Leucine Rich Repeat |
XP_057796934.1 |
Pfam | PF00069 |
Pkinase | Domain | 427 | 695 | 4.5e-39 | 135.2 | Protein kinase domain |
XP_057796934.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 429 | 698 | 1.2e-38 | 133.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。