当前解析结果
SmilChr02G004460| 统一新 Gene ID | SmilChr02G004460 |
|---|---|
| 名称 | SmilChr02G004460 |
| 描述 | wall-associated receptor kinase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 67024212 - 67031874 / - |
| NCBI Gene ID | LOC131012970 |
|---|---|
| GeneID | 131012970 |
| locus_tag | - |
| NCBI Name | LOC131012970 |
| 原始查询 | LOC131012970 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase 1-like |
| 产物 | wall-associated receptor kinase 1-like |
| Arabidopsis | AT1G69730 (AT1G69730)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843309] identity=42.2; qcov=0.707; evalue=6.02e-175; confidence=medium |
| Rice | Os04g0598900 (OsWAK50)- identity=44.2; qcov=0.685; evalue=9.11e-174; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00008 (EGF); PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012970 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796937.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796937.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796937.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796937.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796937.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:67024408 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | C31 |
Chr2:67024408 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | C31 |
Chr2:67024664 |
C |
CCA |
2bp_insertion | frameshift_variant | 1 | C5 |
Chr2:67024664 |
C |
CCA |
2bp_insertion | CDS_variant | 1 | C5 |
Chr2:67024800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,A5,B113,C4 |
Chr2:67024852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B53,B71,C45 |
Chr2:67024870 |
TAA |
T |
2bp_deletion | frameshift_variant | 30 | A15,A19,A6,B114,B126,B135,B138,B27,B33,B41,B51,B55,B62,B63,B90,B92,B93,B94,C2,C21,C33,C67,C70,C73,C74,C77,C79,C81,C82,D4 |
Chr2:67024927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B78 |
Chr2:67024993 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B130,B36,B82,B86 |
Chr2:67025226 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B14,C76 |
Chr2:67025226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,C76 |
Chr2:67025315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B118,C31,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796937.1PF13947
GUB_WAK_bind 31-84 aa
PF07645
EGF_CA 607-642 aa
PF00008
EGF 617-643 aa
PF00069
Pkinase 735-1001 aa
PF07714
PK_Tyr_Ser-Thr 738-1002 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796937.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 31 | 84 | 5.4e-17 | 62.6 | Wall-associated receptor kinase galacturonan-binding |
XP_057796937.1 |
Pfam | PF07645 |
EGF_CA | Domain | 607 | 642 | 2.1e-09 | 38.2 | Calcium-binding EGF domain |
XP_057796937.1 |
Pfam | PF00008 |
EGF | Domain | 617 | 643 | 7.2e-10 | 39.7 | EGF-like domain |
XP_057796937.1 |
Pfam | PF00069 |
Pkinase | Domain | 735 | 1001 | 1.3e-49 | 169.7 | Protein kinase domain |
XP_057796937.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 738 | 1002 | 6.2e-46 | 157.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。