Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004284`

染色体: Chr02 坐标: 65097363-65099823 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004284`
名称	SmilChr02G004284
描述	linalool synthase Tps-5042L13, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65097363 - 65099823 / `+`

ID 对照

NCBI Gene ID	`LOC131012988`
GeneID	`131012988`
locus_tag	`-`
NCBI Name	`LOC131012988`
原始查询	`LOC131012988`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	linalool synthase Tps-5042L13, chloroplastic-like
产物	linalool synthase Tps-5042L13%2C chloroplastic-like
Arabidopsis	`AT3G25820` (TPS-CIN) terpene synthase-like sequence-1,8-cineole [Source:NCBI gene (formerly Entrezgene);Acc:822175] identity=42.3; qcov=0.934; evalue=1.71e-148; confidence=medium
Rice	`Os03g0362500` - identity=32.1; qcov=0.808; evalue=2.81e-70; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131012988

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057796964.1`
2	Cytosol	细胞质基质	0.20000	`XP_057796964.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057796964.1`
4	Nucleus	细胞核	0.00000	`XP_057796964.1`
5	Chromosome	染色体	0.00000	`XP_057796964.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65097396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B103,B127
`Chr2:65097451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:65097458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B121,B136,C80
`Chr2:65097562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:65098136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C82,D10
`Chr2:65098147`	`C`	`CA`	1bp_insertion	frameshift_variant	4	A22,B52,C43,D7
`Chr2:65098147`	`C`	`CA`	1bp_insertion	CDS_variant	4	A22,B52,C43,D7
`Chr2:65098182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C29
`Chr2:65098205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:65098211`	`AG`	`A`	1bp_deletion	frameshift_variant	147	A1,A15,A16,A19,A2,A20,A23,A24,A25,A3,A4,A6,A7,A8,A9,B1,B10,B102,B103,B104,B105,B107,B108,B109,B11,B114,B118,B12,B121,B122,B123,B124,B125,B126,B128,B129,B132,B134,B135,B136,B137,B138,B15,B17,B19,B2,B20,B22,B24,B25,B26,B27,B29,B3,B31,B33,B35,B36,B37,B38,B39,B40,B44,B45,B50,B51,B53,B54,B57,B58,B6,B61,B65,B68,B70,B71,B72,B73,B75,B76,B78,B79,B8,B81,B83,B86,B9,B91,B92,B94,B98,B99,C1,C13,C15,C18,C19,C20,C22,C23,C24,C25,C27,C29,C3,C31,C32,C33,C34,C35,C38,C40,C43,C44,C45,C46,C47,C48,C50,C52,C53,C55,C56,C57,C59,C62,C63,C67,C68,C69,C7,C70,C71,C74,C77,C78,C82,C84,D1,D10,D11,D2,D3,D4,D5,D6,D9
`Chr2:65098216`	`G`	`GA`	1bp_insertion	frameshift_variant	149	A1,A15,A16,A19,A2,A20,A23,A24,A25,A3,A4,A6,A7,A8,A9,B1,B10,B102,B103,B104,B105,B107,B108,B109,B11,B114,B118,B12,B121,B122,B123,B124,B125,B126,B128,B129,B134,B135,B136,B137,B138,B15,B17,B19,B2,B20,B22,B24,B25,B26,B27,B29,B3,B31,B33,B35,B36,B37,B38,B39,B40,B44,B45,B50,B51,B53,B54,B57,B58,B6,B61,B64,B65,B68,B70,B71,B72,B73,B75,B76,B78,B79,B8,B81,B83,B86,B9,B91,B92,B93,B94,B98,B99,C1,C13,C15,C18,C19,C20,C22,C23,C24,C25,C27,C29,C3,C31,C32,C33,C34,C35,C38,C40,C43,C44,C45,C46,C47,C48,C5,C50,C52,C53,C55,C56,C57,C59,C62,C63,C67,C68,C69,C7,C70,C71,C74,C77,C78,C82,C84,D1,D10,D11,D2,D3,D4,D5,D6,D9
`Chr2:65098223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796964.1

590 aa

295

590

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 61-241 aa PF03936 Terpene_synth_C 300-537 aa PF19086 Terpene_syn_C_2 338-537 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796964.1`	Pfam	`PF01397`	Terpene_synth	Repeat	61	241	2.5e-39	135.7	Terpene synthase, N-terminal domain
`XP_057796964.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	300	537	3.9e-83	279.2	Terpene synthase family, metal binding domain
`XP_057796964.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	338	537	4.2e-55	187.3	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940981.1
CAGAAAAACTAATAATCATAAATATGTCTACCACTAGCTTGCGTACACCCATCCTTAGCATGCCGGAAATTCATCTCCACAAGTTGGAGAGGAGAGCTTCAAAGGCGTGTGGTGTCTGTTGTACTGCTCGCCTCCAGGTTTCCTGCTCCTCGCCACTACAAGCTCATCCAATCCGACGATCTGGAAACTACAAGCCTTCCCTTTGGGATTTCACTCACATTCAATCTCTCAACACTCACTATAAGGAAGAGAGCCACTTG...

CDS

1 records

下载 CDS FASTA

LOC131012988
ATGTCTACCACTAGCTTGCGTACACCCATCCTTAGCATGCCGGAAATTCATCTCCACAAGTTGGAGAGGAGAGCTTCAAAGGCGTGTGGTGTCTGTTGTACTGCTCGCCTCCAGGTTTCCTGCTCCTCGCCACTACAAGCTCATCCAATCCGACGATCTGGAAACTACAAGCCTTCCCTTTGGGATTTCACTCACATTCAATCTCTCAACACTCACTATAAGGAAGAGAGCCACTTGAATCGGGAGGCAGAGCTGATTCT...

Protein

1 records

下载 Protein FASTA

XP_057796964.1
MSTTSLRTPILSMPEIHLHKLERRASKACGVCCTARLQVSCSSPLQAHPIRRSGNYKPSLWDFTHIQSLNTHYKEESHLNREAELILQVKMLLQDKMEAVEQLELIHDFKYLRLSYFFQQEIKQILNLIYITHTCFHDNKTEEKDLYFTALGFRILRQHGFNVSQEVFDCFKNERGSDFKESLAQDTKGMLQLYEASFLLREGEETLELARQFSTKCLQRKLEEGGDEIDINLISWIRHSLEIPLHWRTQNLEARWFLDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器