当前解析结果
SmilChr02G004277| 统一新 Gene ID | SmilChr02G004277 |
|---|---|
| 名称 | SmilChr02G004277 |
| 描述 | probable CoA ligase CCL5 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 64970756 - 64976471 / - |
| NCBI Gene ID | LOC131012990 |
|---|---|
| GeneID | 131012990 |
| locus_tag | - |
| NCBI Name | LOC131012990 |
| 原始查询 | LOC131012990 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable CoA ligase CCL5 |
| 产物 | probable CoA ligase CCL5 |
| Arabidopsis | AT1G20510 (OPCL1)OPC-8:0 CoA ligase1 [Source:NCBI gene (formerly Entrezgene);Acc:838639] identity=73.9; qcov=0.986; evalue=0; confidence=high |
| Rice | Os03g0132000 (OsACS4)- identity=63.9; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0005777 (peroxisome); GO:0016405 (CoA-ligase activity) |
| KEGG | smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00501 (AMP-binding); PF13193 (AMP-binding_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012990 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057796972.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057796971.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057796972.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796971.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796971.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:64971609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,C16 |
Chr2:64971645 |
C |
CTA |
2bp_insertion | frameshift_variant | 6 | A13,B23,B49,B52,C39,D11 |
Chr2:64972250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr2:64975242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr2:64975309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C10 |
Chr2:64975363 |
CCG |
C |
2bp_deletion | frameshift_variant | 161 | A1,A11,A13,A15,A18,A20,A25,A4,A6,A7,B1,B10,B100,B102,B104,B105,B106,B108,B109,B11,B111,B113,B117,B121,B122,B124,B125,B127,B129,B13,B133,B134,B136,B137,B138,B14,B140,B16,B19,B2,B20,B21,B22,B23,B24,B25,B26,B29,B3,B30,B31,B32,B33,B35,B36,B37,B4,B40,B41,B42,B43,B45,B49,B5,B50,B53,B55,B56,B58,B59,B60,B61,B62,B63,B65,B66,B68,B71,B72,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,C11,C12,C13,C18,C19,C2,C20,C24,C25,C26,C27,C29,C30,C31,C32,C34,C35,C36,C4,C41,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C58,C59,C60,C61,C62,C63,C64,C65,C67,C68,C69,C70,C71,C72,C77,C78,C79,C8,C86,D1,D10,D11,D2,D3,D4,D7,D8 |
Chr2:64975367 |
G |
GCA |
2bp_insertion | frameshift_variant | 164 | A1,A11,A13,A15,A18,A20,A25,A4,A6,A7,B1,B10,B100,B102,B104,B105,B106,B108,B109,B11,B111,B113,B117,B121,B122,B124,B125,B127,B129,B13,B133,B134,B135,B136,B137,B138,B14,B140,B16,B19,B2,B20,B21,B22,B23,B24,B25,B26,B29,B3,B30,B31,B32,B33,B35,B36,B37,B4,B40,B41,B42,B43,B45,B49,B5,B50,B53,B55,B56,B58,B59,B60,B61,B62,B63,B65,B66,B68,B71,B72,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,C11,C12,C13,C18,C19,C2,C20,C24,C25,C26,C27,C29,C30,C31,C32,C34,C35,C36,C4,C40,C41,C42,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C58,C59,C60,C61,C62,C63,C64,C65,C67,C68,C69,C70,C71,C72,C77,C78,C79,C8,C86,D1,D10,D11,D2,D3,D4,D7,D8 |
Chr2:64975406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B69 |
Chr2:64975407 |
G |
GA |
1bp_insertion | frameshift_variant | 9 | A6,B1,B136,B39,B80,C20,C22,C50,D5 |
Chr2:64975475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B7,C18,C4,C52 |
Chr2:64975499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B63,B90,C21 |
Chr2:64975527 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796971.1PF00501
AMP-binding 48-412 aa
PF13193
AMP-binding_C 463-536 aa
XP_057796972.1PF00501
AMP-binding 48-412 aa
PF13193
AMP-binding_C 463-538 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796971.1 |
Pfam | PF00501 |
AMP-binding | Family | 48 | 412 | 1.1e-87 | 295.0 | AMP-binding enzyme |
XP_057796971.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 463 | 536 | 1e-10 | 43.1 | AMP-binding enzyme C-terminal domain |
XP_057796972.1 |
Pfam | PF00501 |
AMP-binding | Family | 48 | 412 | 1.1e-87 | 295.1 | AMP-binding enzyme |
XP_057796972.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 463 | 538 | 2.4e-18 | 67.6 | AMP-binding enzyme C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。