Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004258`

染色体: Chr02 坐标: 64796328-64798662 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004258`
名称	SmilChr02G004258
描述	sabinene synthase 1, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64796328 - 64798662 / `+`

ID 对照

NCBI Gene ID	`LOC131012991`
GeneID	`131012991`
locus_tag	`-`
NCBI Name	`LOC131012991`
原始查询	`LOC131012991`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sabinene synthase 1, chloroplastic-like
产物	sabinene synthase 1%2C chloroplastic-like
Arabidopsis	`AT4G16730` (TPS02) terpene synthase 02 [Source:NCBI gene (formerly Entrezgene);Acc:827376] identity=39.9; qcov=0.939; evalue=2.35e-120; confidence=medium
Rice	`Os02g0121700` (OsTPS3) - identity=28.6; qcov=0.879; evalue=8.03e-53; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131012991

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057796974.1`
2	Cytoplasm	细胞质	0.60000	`XP_057796973.1`
3	Cytosol	细胞质基质	0.40000	`XP_057796973.1`
4	Nucleus	细胞核	0.00000	`XP_057796973.1`
5	Chromosome	染色体	0.00000	`XP_057796973.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64796399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C72
`Chr2:64796439`	`GCT`	`G`	2bp_deletion	frameshift_variant	5	A15,B23,C1,C55,C77
`Chr2:64796439`	`GCT`	`G`	2bp_deletion	CDS_variant	5	A15,B23,C1,C55,C77
`Chr2:64796476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:64796507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B23,C17,C55
`Chr2:64796602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:64796621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B7,B74,C17,C36,D11
`Chr2:64796629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr2:64796644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr2:64796652`	`TA`	`T`	1bp_deletion	frameshift_variant	4	A4,B93,C2,C20
`Chr2:64796652`	`TA`	`T`	1bp_deletion	CDS_variant	4	A4,B93,C2,C20
`Chr2:64796675`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B21,B52,C24,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796973.1

563 aa

282

563

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 36-218 aa PF03936 Terpene_synth_C 276-515 aa PF19086 Terpene_syn_C_2 317-515 aa

XP_057796974.1

462 aa

231

462

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 42-117 aa PF03936 Terpene_synth_C 175-414 aa PF19086 Terpene_syn_C_2 216-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796973.1`	Pfam	`PF01397`	Terpene_synth	Repeat	36	218	7.6e-41	140.6	Terpene synthase, N-terminal domain
`XP_057796973.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	276	515	7.3e-81	271.7	Terpene synthase family, metal binding domain
`XP_057796973.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	317	515	2.5e-51	175.0	Terpene synthase family 2, C-terminal metal binding
`XP_057796974.1`	Pfam	`PF01397`	Terpene_synth	Repeat	42	117	3.1e-14	53.8	Terpene synthase, N-terminal domain
`XP_057796974.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	175	414	5.6e-81	272.1	Terpene synthase family, metal binding domain
`XP_057796974.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	216	414	1.9e-51	175.4	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940990.1
CTAGTAAACACAAACCAATAAAAAATAATACTATAACTGATCATAAAAATGTCTACTCTTAACGTGTTTGTCTCTTGCACTGCACCTGCTGCTCCACCCTCACAACCAGAAGCTAACCAAATTCGACGCTCTGGAAACTATAAGCCTTCTCTATGGGATTGCATCTACATTCAGTCTCTCAACACACCTTCTAAGGAGAAGAAGCATATGAATAGGCAAGCAGAGCTGATTGAGCAAGTGAAGATGTTGCTAAAGGAAAA...

XM_057940991.1
CTCTATATAATGAGCACAAATGTTTCCACAATAATAATGAAGCAGCAGATGAAAGGAATTTGTATTTCACAGCTCTTGGATTCAGAATCCTCAGACAACATCGTTTTAATGTTTCCACAGGTGCTCAAACTTGAAATGTTTGATTGTTTCAAGAACAAGAAGGGTAATGATTTCAAGGCAAGCCTTGGTCAAGATACGAAAGCAATGTTACAACTTTATGAAGCATCTTTCCTTTTAAGAGAAGGTGAAGATATATTAGA...

CDS

2 records

下载 CDS FASTA

LOC131012991
ATGTCTACTCTTAACGTGTTTGTCTCTTGCACTGCACCTGCTGCTCCACCCTCACAACCAGAAGCTAACCAAATTCGACGCTCTGGAAACTATAAGCCTTCTCTATGGGATTGCATCTACATTCAGTCTCTCAACACACCTTCTAAGGAGAAGAAGCATATGAATAGGCAAGCAGAGCTGATTGAGCAAGTGAAGATGTTGCTAAAGGAAAAAATGGAACCTCTTCAACAATTGGAGTTGATTCATGACTTGAAATATCT...

LOC131012991
ATGAGCACAAATGTTTCCACAATAATAATGAAGCAGCAGATGAAAGGAATTTGTATTTCACAGCTCTTGGATTCAGAATCCTCAGACAACATCGTTTTAATGTTTCCACAGGTGCTCAAACTTGAAATGTTTGATTGTTTCAAGAACAAGAAGGGTAATGATTTCAAGGCAAGCCTTGGTCAAGATACGAAAGCAATGTTACAACTTTATGAAGCATCTTTCCTTTTAAGAGAAGGTGAAGATATATTAGAGCTAGCAAG...

Protein

2 records

下载 Protein FASTA

XP_057796973.1
MSTLNVFVSCTAPAAPPSQPEANQIRRSGNYKPSLWDCIYIQSLNTPSKEKKHMNRQAELIEQVKMLLKEKMEPLQQLELIHDLKYLGLSYFFQDEIMHMLGSLYNEHKCFHNNNEAADERNLYFTALGFRILRQHRFNVSTEMFDCFKNKKGNDFKASLGQDTKAMLQLYEASFLLREGEDILELARIFSTKCLQKKLEEGGDEIDEDLLSWIRHSLDLPLHWRVQGLEARWFLDAYKRRPDMNPLILELAKLDFNIKQ...

XP_057796974.1
MSTNVSTIIMKQQMKGICISQLLDSESSDNIVLMFPQVLKLEMFDCFKNKKGNDFKASLGQDTKAMLQLYEASFLLREGEDILELARIFSTKCLQKKLEEGGDEIDEDLLSWIRHSLDLPLHWRVQGLEARWFLDAYKRRPDMNPLILELAKLDFNIKQATYQQELKDVSKWWSDSCLAEKLPFVRDRIVECYIWAVALFEPHEYGYHRKMAAIMITMVIVIDDIYDVYGTLDELQLFTDTIRRWDTESISQLPYYMQVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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