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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004270

染色体: Chr02 坐标: 64907854-64911972 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004270
名称SmilChr02G004270
描述pentatricopeptide repeat-containing protein At2g17670
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向64907854 - 64911972 / -

ID 对照

NCBI Gene IDLOC131012999
GeneID131012999
locus_tag-
NCBI NameLOC131012999
原始查询LOC131012999

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g17670
产物pentatricopeptide repeat-containing protein At2g17670
ArabidopsisAT2G17670 (AT2G17670)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816274]
identity=52.9; qcov=0.994; evalue=0; confidence=high
RiceOs02g0119700
-
identity=53.2; qcov=0.458; evalue=5.96e-79; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro-
eggNOG-
NRGeneID:131012999

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057796981.1
2 Nucleus 细胞核 0.00000 XP_057796981.1
3 Chromosome 染色体 0.00000 XP_057796981.1
4 Centromere 着丝粒 0.00000 XP_057796981.1
5 Chromatin 染色质 0.00000 XP_057796981.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:64910472 G A EMS_canonical_SNV CDS_variant 4 B124,B2,B9,C25
Chr2:64910549 G A EMS_canonical_SNV CDS_variant 1 B65
Chr2:64911044 G A EMS_canonical_SNV CDS_variant 1 B65
Chr2:64911326 G A EMS_canonical_SNV CDS_variant 2 C75,D1
Chr2:64911542 C T EMS_canonical_SNV CDS_variant 2 A5,B61
Chr2:64911662 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:64911763 C T EMS_canonical_SNV CDS_variant 1 B27
Chr2:64911802 G A EMS_canonical_SNV CDS_variant 3 B69,C64,C66
Chr2:64911827 G A EMS_canonical_SNV CDS_variant 2 B46,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796981.1
476 aa
N
1
238
476
PPR_3
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
C
PF13812 PPR_3 195-251 aa PF13041 PPR_2 206-255 aa PF13812 PPR_3 233-288 aa PF12854 PPR_1 239-267 aa PF13041 PPR_2 241-290 aa PF01535 PPR 244-274 aa PF13812 PPR_3 264-320 aa PF01535 PPR 280-307 aa PF13041 PPR_2 280-325 aa PF17177 PPR_long 298-460 aa PF13812 PPR_3 304-356 aa PF12854 PPR_1 309-339 aa PF13041 PPR_2 311-360 aa PF01535 PPR 314-343 aa PF13812 PPR_3 336-394 aa PF12854 PPR_1 342-375 aa PF01535 PPR 349-379 aa PF13041 PPR_2 349-395 aa PF12854 PPR_1 378-410 aa PF13041 PPR_2 381-429 aa PF01535 PPR 385-411 aa PF13812 PPR_3 405-459 aa PF12854 PPR_1 420-442 aa PF01535 PPR 420-443 aa
XP_057796982.1
476 aa
N
1
238
476
PPR_3
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
C
PF13812 PPR_3 195-251 aa PF13041 PPR_2 206-255 aa PF13812 PPR_3 233-288 aa PF12854 PPR_1 239-267 aa PF13041 PPR_2 241-290 aa PF01535 PPR 244-274 aa PF13812 PPR_3 264-320 aa PF01535 PPR 280-307 aa PF13041 PPR_2 280-325 aa PF17177 PPR_long 298-460 aa PF13812 PPR_3 304-356 aa PF12854 PPR_1 309-339 aa PF13041 PPR_2 311-360 aa PF01535 PPR 314-343 aa PF13812 PPR_3 336-394 aa PF12854 PPR_1 342-375 aa PF01535 PPR 349-379 aa PF13041 PPR_2 349-395 aa PF12854 PPR_1 378-410 aa PF13041 PPR_2 381-429 aa PF01535 PPR 385-411 aa PF13812 PPR_3 405-459 aa PF12854 PPR_1 420-442 aa PF01535 PPR 420-443 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796981.1 Pfam PF13812 PPR_3 Repeat 195 251 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796981.1 Pfam PF13041 PPR_2 Repeat 206 255 3.7e-83 274.2 PPR repeat family
XP_057796981.1 Pfam PF13812 PPR_3 Repeat 233 288 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796981.1 Pfam PF12854 PPR_1 Repeat 239 267 1.1e-56 188.9 PPR repeat
XP_057796981.1 Pfam PF13041 PPR_2 Repeat 241 290 3.7e-83 274.2 PPR repeat family
XP_057796981.1 Pfam PF01535 PPR Repeat 244 274 7e-44 145.8 PPR repeat
XP_057796981.1 Pfam PF13812 PPR_3 Repeat 264 320 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796981.1 Pfam PF01535 PPR Repeat 280 307 7e-44 145.8 PPR repeat
XP_057796981.1 Pfam PF13041 PPR_2 Repeat 280 325 3.7e-83 274.2 PPR repeat family
XP_057796981.1 Pfam PF17177 PPR_long Repeat 298 460 3.4e-21 76.3 Pentacotripeptide-repeat region of PRORP
XP_057796981.1 Pfam PF13812 PPR_3 Repeat 304 356 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796981.1 Pfam PF12854 PPR_1 Repeat 309 339 1.1e-56 188.9 PPR repeat
XP_057796981.1 Pfam PF13041 PPR_2 Repeat 311 360 3.7e-83 274.2 PPR repeat family
XP_057796981.1 Pfam PF01535 PPR Repeat 314 343 7e-44 145.8 PPR repeat
XP_057796981.1 Pfam PF13812 PPR_3 Repeat 336 394 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796981.1 Pfam PF12854 PPR_1 Repeat 342 375 1.1e-56 188.9 PPR repeat
XP_057796981.1 Pfam PF01535 PPR Repeat 349 379 7e-44 145.8 PPR repeat
XP_057796981.1 Pfam PF13041 PPR_2 Repeat 349 395 3.7e-83 274.2 PPR repeat family
XP_057796981.1 Pfam PF12854 PPR_1 Repeat 378 410 1.1e-56 188.9 PPR repeat
XP_057796981.1 Pfam PF13041 PPR_2 Repeat 381 429 3.7e-83 274.2 PPR repeat family
XP_057796981.1 Pfam PF01535 PPR Repeat 385 411 7e-44 145.8 PPR repeat
XP_057796981.1 Pfam PF13812 PPR_3 Repeat 405 459 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796981.1 Pfam PF12854 PPR_1 Repeat 420 442 1.1e-56 188.9 PPR repeat
XP_057796981.1 Pfam PF01535 PPR Repeat 420 443 7e-44 145.8 PPR repeat
XP_057796982.1 Pfam PF13812 PPR_3 Repeat 195 251 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796982.1 Pfam PF13041 PPR_2 Repeat 206 255 3.7e-83 274.2 PPR repeat family
XP_057796982.1 Pfam PF13812 PPR_3 Repeat 233 288 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796982.1 Pfam PF12854 PPR_1 Repeat 239 267 1.1e-56 188.9 PPR repeat
XP_057796982.1 Pfam PF13041 PPR_2 Repeat 241 290 3.7e-83 274.2 PPR repeat family
XP_057796982.1 Pfam PF01535 PPR Repeat 244 274 7e-44 145.8 PPR repeat
XP_057796982.1 Pfam PF13812 PPR_3 Repeat 264 320 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796982.1 Pfam PF01535 PPR Repeat 280 307 7e-44 145.8 PPR repeat
XP_057796982.1 Pfam PF13041 PPR_2 Repeat 280 325 3.7e-83 274.2 PPR repeat family
XP_057796982.1 Pfam PF17177 PPR_long Repeat 298 460 3.4e-21 76.3 Pentacotripeptide-repeat region of PRORP
XP_057796982.1 Pfam PF13812 PPR_3 Repeat 304 356 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796982.1 Pfam PF12854 PPR_1 Repeat 309 339 1.1e-56 188.9 PPR repeat
XP_057796982.1 Pfam PF13041 PPR_2 Repeat 311 360 3.7e-83 274.2 PPR repeat family
XP_057796982.1 Pfam PF01535 PPR Repeat 314 343 7e-44 145.8 PPR repeat
XP_057796982.1 Pfam PF13812 PPR_3 Repeat 336 394 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796982.1 Pfam PF12854 PPR_1 Repeat 342 375 1.1e-56 188.9 PPR repeat
XP_057796982.1 Pfam PF01535 PPR Repeat 349 379 7e-44 145.8 PPR repeat
XP_057796982.1 Pfam PF13041 PPR_2 Repeat 349 395 3.7e-83 274.2 PPR repeat family
XP_057796982.1 Pfam PF12854 PPR_1 Repeat 378 410 1.1e-56 188.9 PPR repeat
XP_057796982.1 Pfam PF13041 PPR_2 Repeat 381 429 3.7e-83 274.2 PPR repeat family
XP_057796982.1 Pfam PF01535 PPR Repeat 385 411 7e-44 145.8 PPR repeat
XP_057796982.1 Pfam PF13812 PPR_3 Repeat 405 459 6.7e-34 116.5 Pentatricopeptide repeat domain
XP_057796982.1 Pfam PF12854 PPR_1 Repeat 420 442 1.1e-56 188.9 PPR repeat
XP_057796982.1 Pfam PF01535 PPR Repeat 420 443 7e-44 145.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XR_009097554.1
AGAAAAGAAAAGCATCAAGTTGAGGCAGAATCGCAGTTCCCCGAAGCATAAACCCCCACAAAACCCTACCGTCAAATCCAATCTCTCAATTCCGAATGGCAAGTAGAAAAATGGGGAAAATTCCACAGGCTTTCAGGAGGGTAGCCGCTCAATCCCCAGCTTCGACTCTCCTCAAGCCGAAAACCTCTTCCGCTTTGCAGGCTGAGAAAGCCCCACCACCAGTTCCTCATTGGCAAAGGCAGAAGAAATTTTCCGAGAAA...
XR_009097555.1
AGAAAAGAAAAGCATCAAGTTGAGGCAGAATCGCAGTTCCCCGAAGCATAAACCCCCACAAAACCCTACCGTCAAATCCAATCTCTCAATTCCGAATGGCAAGTAGAAAAATGGGGAAAATTCCACAGGCTTTCAGGAGGGTAGCCGCTCAATCCCCAGCTTCGACTCTCCTCAAGCCGAAAACCTCTTCCGCTTTGCAGGCTGAGAAAGCCCCACCACCAGTTCCTCATTGGCAAAGGCAGAAGAAATTTTCCGAGAAA...

CDS

2 records

下载 CDS FASTA
LOC131012999
ATGGCAAGTAGAAAAATGGGGAAAATTCCACAGGCTTTCAGGAGGGTAGCCGCTCAATCCCCAGCTTCGACTCTCCTCAAGCCGAAAACCTCTTCCGCTTTGCAGGCTGAGAAAGCCCCACCACCAGTTCCTCATTGGCAAAGGCAGAAGAAATTTTCCGAGAAAAGACCCGTCGCAGAGAACGATTTCGCAGCAAAATCTCCGTCGCTAATTTTCGAGTCTGCAAATCTCTCAGACGCCAAATCTCTTTTCAACTCCTT...
LOC131012999
ATGGCAAGTAGAAAAATGGGGAAAATTCCACAGGCTTTCAGGAGGGTAGCCGCTCAATCCCCAGCTTCGACTCTCCTCAAGCCGAAAACCTCTTCCGCTTTGCAGGCTGAGAAAGCCCCACCACCAGTTCCTCATTGGCAAAGGCAGAAGAAATTTTCCGAGAAAAGACCCGTCGCAGAGAACGATTTCGCAGCAAAATCTCCGTCGCTAATTTTCGAGTCTGCAAATCTCTCAGACGCCAAATCTCTTTTCAACTCCTT...

Protein

2 records

下载 Protein FASTA
XP_057796981.1
MASRKMGKIPQAFRRVAAQSPASTLLKPKTSSALQAEKAPPPVPHWQRQKKFSEKRPVAENDFAAKSPSLIFESANLSDAKSLFNSFISSTRDAPSEASFYNSILQSFAAVSSIQDSIFFLNHMVKKHPPFCPNRFTYHILLKQACSSADEESLSGVHNVLNLMTNSGFPPNQVSTDVSARALCECGREEHAVELVKELSTKNLLPDTYTYNFMVRHLVKNRSVSSANSFITDMKVFVINPDLVTYTIMIDNVCNTKNLR...
XP_057796982.1
MASRKMGKIPQAFRRVAAQSPASTLLKPKTSSALQAEKAPPPVPHWQRQKKFSEKRPVAENDFAAKSPSLIFESANLSDAKSLFNSFISSTRDAPSEASFYNSILQSFAAVSSIQDSIFFLNHMVKKHPPFCPNRFTYHILLKQACSSADEESLSGVHNVLNLMTNSGFPPNQVSTDVSARALCECGREEHAVELVKELSTKNLLPDTYTYNFMVRHLVKNRSVSSANSFITDMKVFVINPDLVTYTIMIDNVCNTKNLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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