Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004300`

染色体: Chr02 坐标: 65373806-65375732 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004300`
名称	SmilChr02G004300
描述	glycine cleavage system H protein 2, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65373806 - 65375732 / `-`

ID 对照

NCBI Gene ID	`LOC131013040`
GeneID	`131013040`
locus_tag	`-`
NCBI Name	`LOC131013040`
原始查询	`LOC131013040`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycine cleavage system H protein 2, mitochondrial-like
产物	glycine cleavage system H protein 2%2C mitochondrial-like
Arabidopsis	`AT2G35120` (AT2G35120) Single hybrid motif superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818078] identity=65.5; qcov=0.872; evalue=8.26e-48; confidence=medium
Rice	`Os02g0170100` - identity=60.9; qcov=0.827; evalue=7.27e-43; confidence=medium
GO	GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0005960 (glycine cleavage complex); GO:0009249 (protein lipoylation); GO:0019464 (glycine decarboxylation via glycine cleavage system)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00364 (Biotin_lipoyl); PF01597 (GCV_H)
InterPro	-
eggNOG	-
NR	GeneID:131013040

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057797015.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057797015.1`
3	Nucleus	细胞核	0.00000	`XP_057797015.1`
4	Chromosome	染色体	0.00000	`XP_057797015.1`
5	Centromere	着丝粒	0.00000	`XP_057797015.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65374398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:65374581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B32,B69,C30,C86
`Chr2:65375421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B139,C31,D1
`Chr2:65375473`	`CAT`	`C`	2bp_deletion	frameshift_variant	3	B136,B44,C14
`Chr2:65375473`	`CAT`	`C`	2bp_deletion	CDS_variant	3	B136,B44,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797015.1

150 aa

150

GCV_H

Biotin_lipoyl

PF01597 GCV_H 30-149 aa PF00364 Biotin_lipoyl 69-103 aa

XP_057797016.1

133 aa

133

GCV_H

Biotin_lipoyl

PF01597 GCV_H 30-114 aa PF00364 Biotin_lipoyl 69-104 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797015.1`	Pfam	`PF01597`	GCV_H	Domain	30	149	5.6e-45	152.9	Glycine cleavage H-protein
`XP_057797015.1`	Pfam	`PF00364`	Biotin_lipoyl	Domain	69	103	4.2e-06	27.2	Biotin-requiring enzyme
`XP_057797016.1`	Pfam	`PF01597`	GCV_H	Domain	30	114	3.6e-29	101.8	Glycine cleavage H-protein
`XP_057797016.1`	Pfam	`PF00364`	Biotin_lipoyl	Domain	69	104	4e-06	27.3	Biotin-requiring enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941032.1
ACTCGCCTCGATTCGCACCCGACCAGTGCACCAACCCCACCCCAACCCTTCTCATTCATAAACTCAGTCCCAGGGTTTGCCAAAAGAGAATAGAATGCGTCATTTATAAGTCATAACGCAATATATGGCTTTATATATATAAAAAGAAGTACTTAGTTAATTAATGTTTTACACAAAAGAAAAGGCCAAAATAGGATGAATAATCGCTGCCAACGAATCGGTGGTCGATCTTTTGTGAATGTAAGTCGTTCTTAAATATG...

XM_057941033.1
ACTCGCCTCGATTCGCACCCGACCAGTGCACCAACCCCACCCCAACCCTTCTCATTCATAAACTCAGTCCCAGGGTTTGCCAAAAGAGAATAGAATGCGTCATTTATAAGTCATAACGCAATATATGGCTTTATATATATAAAAAGAAGTACTTAGTTAATTAATGTTTTACACAAAAGAAAAGGCCAAAATAGGATGAATAATCGCTGCCAACGAATCGGTGGTCGATCTTTTGTGAATGTAAGTCGTTCTTAAATATG...

CDS

2 records

下载 CDS FASTA

LOC131013040
ATGGCTTCGAAATTGTGGGCGACAAGGCTCGCTTCATACCTTAAAATTTCCGCTCACAATAGAGGTTTAGCCACTGTCGTTGATGATCTAAAGTATGCCGAGTCTCATGAATGGGTGAAAGTTGAAGGTAATTGTGTTACTATAGGCATTAGTGATCACGCCCTAGACCACTTAGGCCACATTATATTTGTCGGACTACCTGATGAGGGAGCTGAAGTGAAACAGGGCGCAGTTTTTGGCACTGTTGAAAGCATGAAATC...

Protein

2 records

下载 Protein FASTA

XP_057797015.1
MASKLWATRLASYLKISAHNRGLATVVDDLKYAESHEWVKVEGNCVTIGISDHALDHLGHIIFVGLPDEGAEVKQGAVFGTVESMKSTSDINSPVSGKVVEVNTELTGSPGLMNASPYERGWMAKVEMANAEEVKSLMDPEHYSKFCEEK

XP_057797016.1
MASKLWATRLASYLKISAHNRGLATVVDDLKYAESHEWVKVEGNCVTIGISDHALDHLGHIIFVGLPDEGAEVKQGAVFGTVESMKSTSDINSPVSGKVVEVNTELTGSPGLVSYKDECKPLRKGMDGKGGDG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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