Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004317

染色体: Chr02 坐标: 65499929-65502746 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004317
名称SmilChr02G004317
描述N-alpha-acetyltransferase MAK3
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向65499929 - 65502746 / +

ID 对照

NCBI Gene IDLOC131013055
GeneID131013055
locus_tag-
NCBI NameLOC131013055
原始查询LOC131013055

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述N-alpha-acetyltransferase MAK3
产物N-alpha-acetyltransferase MAK3
ArabidopsisAT2G38130 (ATMAK3)
Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818391]
identity=81.4; qcov=0.879; evalue=2.64e-102; confidence=high
RiceOs11g0525800
-
identity=86.7; qcov=0.832; evalue=9.58e-100; confidence=high
GOGO:0004596 (protein-N-terminal amino-acid acetyltransferase activity); GO:0017196 (N-terminal peptidyl-methionine acetylation); GO:0031417 (NatC complex)
KEGG-
PfamPF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro-
eggNOG-
NRGeneID:131013055

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057797040.1
2 Cytoplasm 细胞质 1.00000 XP_057797040.1
3 Chromosome 染色体 0.00000 XP_057797040.1
4 Centromere 着丝粒 0.00000 XP_057797040.1
5 Chromatin 染色质 0.00000 XP_057797040.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:65501376 G A EMS_canonical_SNV CDS_variant 1 B32
Chr2:65501400 G A EMS_canonical_SNV CDS_variant 1 B97
Chr2:65501596 C T EMS_canonical_SNV CDS_variant 1 B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797040.1
190 aa
N
1
95
190
Acetyltransf_1
Acetyltransf_10
Acetyltransf_7
FR47
C
PF00583 Acetyltransf_1 24-134 aa PF13673 Acetyltransf_10 52-140 aa PF13508 Acetyltransf_7 53-135 aa PF08445 FR47 77-137 aa
XP_057797041.1
190 aa
N
1
95
190
Acetyltransf_1
Acetyltransf_10
Acetyltransf_7
FR47
C
PF00583 Acetyltransf_1 24-134 aa PF13673 Acetyltransf_10 52-140 aa PF13508 Acetyltransf_7 53-135 aa PF08445 FR47 77-137 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797040.1 Pfam PF00583 Acetyltransf_1 Family 24 134 7.7e-22 78.5 Acetyltransferase (GNAT) family
XP_057797040.1 Pfam PF13673 Acetyltransf_10 Domain 52 140 1.7e-08 35.2 Acetyltransferase (GNAT) domain
XP_057797040.1 Pfam PF13508 Acetyltransf_7 Domain 53 135 3.1e-11 44.2 Acetyltransferase (GNAT) domain
XP_057797040.1 Pfam PF08445 FR47 Family 77 137 9.7e-07 29.4 FR47-like protein
XP_057797041.1 Pfam PF00583 Acetyltransf_1 Family 24 134 7.7e-22 78.5 Acetyltransferase (GNAT) family
XP_057797041.1 Pfam PF13673 Acetyltransf_10 Domain 52 140 1.7e-08 35.2 Acetyltransferase (GNAT) domain
XP_057797041.1 Pfam PF13508 Acetyltransf_7 Domain 53 135 3.1e-11 44.2 Acetyltransferase (GNAT) domain
XP_057797041.1 Pfam PF08445 FR47 Family 77 137 9.7e-07 29.4 FR47-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057941058.1
TTAATTTCTCCCCATACCTTACCTTGCGGGAAGAAATTACAATTTCTGCGAAACGGGAAGAAGAAGCCACCGCCGCCTCCGCCCTCGTGCTACCACCGCCTTAGCCCTCAGCCGCCATTTCTGACTGGAACAGACGAAGCCTCAGGCTCCGCCTCACTGCAGCTGCAGTCGCGTCGCCCGTCGCCCCACCTCCACCATTTTTCGGCCCGCCTTCGGCCTCCGTTTCATCCTTCACTCTTCAGTCTTCAAGTAACAGCTCA...
XM_057941057.1
AATTTCTCCCCATACCTTACCTTGCGGGAAGAAATTACAATTTCTGCGAAACGGGAAGAAGAAGCCACCGCCGCCTCCGCCCTCGTGCTACCACCGCCTTAGCCCTCAGCCGCCATTTCTGACTGGAACAGACGAAGCCTCAGGCTCCGCCTCACTGCAGCTGCAGTCGCGTCGCCCGTCGCCCCACCTCCACCATTTTTCGGCCCGCCTTCGGCCTCCGTTTCATCCTTCACTCTTCAGTCTTCAACCGACCGACAAGA...

CDS

2 records

下载 CDS FASTA
LOC131013055
ATGGCGGCCGAGTTTGATACGTCAGAGATAGAGTATGTGAGCTACAGCGGCGAGCATCACCTGCCGCTGATTATGAATCTGGTGGATCAGGAGCTGAGCGAACCATATTCCATCTTTACCTACAGATACTTCGTCTATCTCTGGCCCAATCTCTCTTTCCTCGCATTCCATGAAGGAAAATGCGTGGGCACGGTGGTATGCAAGATGGGAGATCATCGCCATACTTTCAGAGGATACATCGCCATGCTCGTTGTTCTCAA...
LOC131013055
ATGGCGGCCGAGTTTGATACGTCAGAGATAGAGTATGTGAGCTACAGCGGCGAGCATCACCTGCCGCTGATTATGAATCTGGTGGATCAGGAGCTGAGCGAACCATATTCCATCTTTACCTACAGATACTTCGTCTATCTCTGGCCCAATCTCTCTTTCCTCGCATTCCATGAAGGAAAATGCGTGGGCACGGTGGTATGCAAGATGGGAGATCATCGCCATACTTTCAGAGGATACATCGCCATGCTCGTTGTTCTCAA...

Protein

2 records

下载 Protein FASTA
XP_057797040.1
MAAEFDTSEIEYVSYSGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPNLSFLAFHEGKCVGTVVCKMGDHRHTFRGYIAMLVVLNPYRGRGIATELVSRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPRPEPNYSDSIKSIVDEGVEHGDGISPEERNMQ
XP_057797041.1
MAAEFDTSEIEYVSYSGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPNLSFLAFHEGKCVGTVVCKMGDHRHTFRGYIAMLVVLNPYRGRGIATELVSRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPRPEPNYSDSIKSIVDEGVEHGDGISPEERNMQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器