当前解析结果
SmilChr02G004316| 统一新 Gene ID | SmilChr02G004316 |
|---|---|
| 名称 | SmilChr02G004316 |
| 描述 | cleavage and polyadenylation specificity factor subunit 3-II |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65484708 - 65493950 / - |
| NCBI Gene ID | LOC131013060 |
|---|---|
| GeneID | 131013060 |
| locus_tag | - |
| NCBI Name | LOC131013060 |
| 原始查询 | LOC131013060 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cleavage and polyadenylation specificity factor subunit 3-II |
| 产物 | cleavage and polyadenylation specificity factor subunit 3-II |
| Arabidopsis | AT2G01730 (CPSF73-II)cleavage and polyadenylation specificity factor 73 kDa subunit-II [Source:NCBI gene (formerly Entrezgene);Acc:814702] identity=66; qcov=1; evalue=0; confidence=high |
| Rice | Os09g0397900- identity=71.1; qcov=0.867; evalue=0; confidence=high |
| GO | GO:0005634 (nucleus); GO:0016180 (snRNA processing) |
| KEGG | - |
| Pfam | PF00753 (Lactamase_B); PF07521 (RMMBL); PF10996 (Beta-Casp); PF16661 (Lactamase_B_6); PF23023 (Anti-Pycsar_Apyc1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013060 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797045.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057797045.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797045.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797045.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797045.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65484894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B16,C64,C66 |
Chr2:65484920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B46 |
Chr2:65485050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C7 |
Chr2:65485059 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B16,C64,C66 |
Chr2:65485070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:65485251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B34,C20,C47,C76 |
Chr2:65485273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B12,B88 |
Chr2:65485352 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B33 |
Chr2:65485352 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B33 |
Chr2:65485357 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B33 |
Chr2:65485357 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B33 |
Chr2:65485390 |
AC |
A |
1bp_deletion | frameshift_variant | 24 | A19,B100,B103,B113,B120,B125,B44,B50,B52,B60,B65,B69,B75,B85,B98,C16,C20,C21,C53,C55,C60,C7,C70,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797045.1PF00753
Lactamase_B 15-179 aa
PF23023
Anti-Pycsar_Apyc1 17-184 aa
PF16661
Lactamase_B_6 21-191 aa
PF10996
Beta-Casp 244-362 aa
PF07521
RMMBL 379-439 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797045.1 |
Pfam | PF00753 |
Lactamase_B | Domain | 15 | 179 | 1.4e-11 | 45.4 | Metallo-beta-lactamase superfamily |
XP_057797045.1 |
Pfam | PF23023 |
Anti-Pycsar_Apyc1 | Family | 17 | 184 | 9e-08 | 32.9 | Anti-Pycsar protein Apyc1 |
XP_057797045.1 |
Pfam | PF16661 |
Lactamase_B_6 | Domain | 21 | 191 | 5.5e-20 | 72.3 | Metallo-beta-lactamase superfamily domain |
XP_057797045.1 |
Pfam | PF10996 |
Beta-Casp | Domain | 244 | 362 | 2.4e-26 | 93.4 | Beta-Casp domain |
XP_057797045.1 |
Pfam | PF07521 |
RMMBL | Motif | 379 | 439 | 6.7e-17 | 62.0 | Zn-dependent metallo-hydrolase RNA specificity domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。