Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004325`

染色体: Chr02 坐标: 65542733-65544954 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004325`
名称	SmilChr02G004325
描述	(R)-mandelonitrile lyase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65542733 - 65544954 / `-`

ID 对照

NCBI Gene ID	`LOC131013069`
GeneID	`131013069`
locus_tag	`-`
NCBI Name	`LOC131013069`
原始查询	`LOC131013069`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(R)-mandelonitrile lyase-like
产物	(R)-mandelonitrile lyase-like
Arabidopsis	`AT1G73050` (AT1G73050) Glucose-methanol-choline (GMC) oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843636] identity=68.9; qcov=0.948; evalue=0; confidence=high
Rice	`Os09g0363900` (ONI3) - identity=46.8; qcov=1.07; evalue=1.11e-164; confidence=high
GO	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00732 (GMC_oxred_N); PF05199 (GMC_oxred_C)
InterPro	-
eggNOG	-
NR	GeneID:131013069

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057797053.1`
2	Secreted	分泌到胞外	0.40000	`XP_057797053.1`
3	Nucleus	细胞核	0.00000	`XP_057797053.1`
4	Chromosome	染色体	0.00000	`XP_057797053.1`
5	Centromere	着丝粒	0.00000	`XP_057797053.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65542968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B63,B75,B83,C4
`Chr2:65543136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B33,B76
`Chr2:65543176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B97,C31
`Chr2:65543288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr2:65543304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:65543319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:65543333`	`CT`	`C`	1bp_deletion	frameshift_variant	1	D11
`Chr2:65543333`	`CT`	`C`	1bp_deletion	CDS_variant	1	D11
`Chr2:65543340`	`T`	`TC`	1bp_insertion	frameshift_variant	1	D11
`Chr2:65543340`	`T`	`TC`	1bp_insertion	CDS_variant	1	D11
`Chr2:65543343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:65543382`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797053.1

543 aa

272

543

GMC_oxred_N

GMC_oxred_C

PF00732 GMC_oxred_N 51-322 aa PF05199 GMC_oxred_C 391-531 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797053.1`	Pfam	`PF00732`	GMC_oxred_N	Domain	51	322	3.3e-21	76.8	GMC oxidoreductase
`XP_057797053.1`	Pfam	`PF05199`	GMC_oxred_C	Domain	391	531	2.4e-29	103.4	GMC oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941070.1
TGATGGGTGGCGCCATATAGAAATAGGGAGCACAGTTTGACATAACCATTATTCTAACTGATTTTCCCACCAAAACCCTCTCTACTTCTTCAGCTTAACCGCAAACCACAGCCATCATTCTCTCTTTTCTCCATCTCTCAAAGAAATCTCGCCCAAAACCAAGAAAATCCAAGCTTGCCTGCAGCAATGCCGGAAAGATTCTTCACACTTCCGGCGCGATTTCTTATTCTCTTCGCAATCGCCGCTCTGATCTCTCTACC...

CDS

1 records

下载 CDS FASTA

LOC131013069
ATGCCGGAAAGATTCTTCACACTTCCGGCGCGATTTCTTATTCTCTTCGCAATCGCCGCTCTGATCTCTCTACCCCTATCACATTCTCAACAAAGTCCGGCGTATCTGGGGCTGGTGTCGAACGCCACTGAATTTCCGGCGGAAGATTACTATGACTACATAATTGTAGGCGGCGGCACAGCCGGCTGCCCACTGGCGGCGACGCTGTCGGAAGGGTTTAGGGTTCTTGTTCTGGAGAGGGGGGGAGTTCCATTTGGGTT...

Protein

1 records

下载 Protein FASTA

XP_057797053.1
MPERFFTLPARFLILFAIAALISLPLSHSQQSPAYLGLVSNATEFPAEDYYDYIIVGGGTAGCPLAATLSEGFRVLVLERGGVPFGFRNLMSRDGFLTTLMEVDAHDSPAQSFTSEDGVPNARGRVLGGSSAINAGFYSRADPDFYNKSGIDWDLRMVNQSYEWVEKAIVFRPELRIWQSAVRDALLEAGIDPYHGFSLDHIVGTKIGGSTFDSSGTRHSAADLLSYANPRNLKVAVHASVERILLAPTAAKQSAIGVIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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