Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004328`

染色体: Chr02 坐标: 65561974-65565788 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004328`
名称	SmilChr02G004328
描述	tyrosine-sulfated glycopeptide receptor 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65561974 - 65565788 / `+`

ID 对照

NCBI Gene ID	`LOC131013073`
GeneID	`131013073`
locus_tag	`-`
NCBI Name	`LOC131013073`
原始查询	`LOC131013073`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tyrosine-sulfated glycopeptide receptor 1-like
产物	tyrosine-sulfated glycopeptide receptor 1-like
Arabidopsis	`AT1G72300` (PSY1R) Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843562] identity=54.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0153400` (LRK6) - identity=47.8; qcov=0.974; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131013073

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797059.1`
2	Nucleus	细胞核	0.00000	`XP_057797059.1`
3	Chromosome	染色体	0.00000	`XP_057797059.1`
4	Centromere	着丝粒	0.00000	`XP_057797059.1`
5	Chromatin	染色质	0.00000	`XP_057797059.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65562549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:65562618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B50,C23
`Chr2:65562785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr2:65562795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr2:65562874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B57,B93,C67
`Chr2:65562910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B57,B93,C67
`Chr2:65563342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:65563359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr2:65563377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B5
`Chr2:65563405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr2:65564274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:65564398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B74,B96,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797059.1

1048 aa

524

1048

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 29-63 aa PF00560 LRR_1 88-107 aa PF00560 LRR_1 160-181 aa PF00560 LRR_1 185-207 aa PF13855 LRR_8 233-292 aa PF00560 LRR_1 257-279 aa PF00560 LRR_1 281-303 aa PF13855 LRR_8 435-494 aa PF00560 LRR_1 459-480 aa PF00560 LRR_1 484-503 aa PF00560 LRR_1 570-590 aa PF00560 LRR_1 592-614 aa PF00069 Pkinase 759-1026 aa PF07714 PK_Tyr_Ser-Thr 761-1027 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797059.1`	Pfam	`PF08263`	LRRNT_2	Family	29	63	1.3e-05	26.1	Leucine rich repeat N-terminal domain
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	88	107	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	160	181	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	185	207	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF13855`	LRR_8	Repeat	233	292	7.7e-36	122.4	Leucine rich repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	257	279	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	281	303	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF13855`	LRR_8	Repeat	435	494	7.7e-36	122.4	Leucine rich repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	459	480	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	484	503	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	570	590	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00560`	LRR_1	Repeat	592	614	8.9e-44	138.7	Leucine Rich Repeat
`XP_057797059.1`	Pfam	`PF00069`	Pkinase	Domain	759	1026	1.6e-41	143.1	Protein kinase domain
`XP_057797059.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	761	1027	5.2e-42	144.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941076.1
AATTAATACTACTTTAATTAGTTTATATTCTTCTCCAGGTAACTTGCGCTAACAAGCAAGATTAAATACATTTGTTTGATGGAATTAAACATTATCAATGTGGACAAATTTTTTCAATAAAAGACAGAAAATGTGAGTCGCTCATCTTCAGATATACTCCACAACACAGCCCATTGTTTCTGCATCTCCTAAAAAGGAAAATAATTCTAGGTTAATACGTAACCTCTATTCAAGCAGCCGCCACTGTACAAATTCTAGCA...

CDS

1 records

下载 CDS FASTA

LOC131013073
ATGCACTTGAATTCCCACTTAGCCATACTTGTAGCAGCAATATCATATTTTGCAGGCACATCTGATGGGTCCTGCAATGAAGTCGACCGCCATTCTTTATCATCATTCAACCTCAGCATCAGCGCTGCGCCTCCCTTGAACTGGTCTCTCTCTGCAGATTGCTGCACTTGGGAAGGTGTCTCTTGCGACAATTCAAGCAGAGTTACCAGTCTATGGCTCCCATCAAGAGGCCTAGTTGGTAACATGTCGCCTTGGCTCAT...

Protein

1 records

下载 Protein FASTA

XP_057797059.1
MHLNSHLAILVAAISYFAGTSDGSCNEVDRHSLSSFNLSISAAPPLNWSLSADCCTWEGVSCDNSSRVTSLWLPSRGLVGNMSPWLMNLTTLNLSHNTLSGPLPDGFFTSSFIVIDLSINRLSGALSPSNNLPPTIQSFNLSCNSFHGTIPSSFLETASKLQAFDVSNNSFSGSVPSSICSYSPSLERLDFSNNDFSDQIPAGFGECSKLQSLRAGFNNLSGQIPHDIYSLSTLQQLYLPGNKLSGVMNQSIASLINLKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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