Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004338`

染色体: Chr02 坐标: 65619917-65630140 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004338`
名称	SmilChr02G004338
描述	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65619917 - 65630140 / `-`

ID 对照

NCBI Gene ID	`LOC131013082`
GeneID	`131013082`
locus_tag	`-`
NCBI Name	`LOC131013082`
原始查询	`LOC131013082`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like
产物	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like
Arabidopsis	`AT3G14270` (FAB1B) phosphatidylinositol-4-phosphate 5-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820647] identity=58.1; qcov=1.05; evalue=0; confidence=high
Rice	`Os08g0428900` (P0479C08.109) - identity=46.3; qcov=0.882; evalue=0; confidence=high
GO	GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process); GO:0046872 (metal ion binding)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00118 (Cpn60_TCP1); PF01363 (FYVE); PF01504 (PIP5K)
InterPro	-
eggNOG	-
NR	GeneID:131013082

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057797067.1`
2	Golgi apparatus	高尔基体	0.20000	`XP_057797067.1`
3	Endosome	内体	0.20000	`XP_057797067.1`
4	Nucleus	细胞核	0.00000	`XP_057797067.1`
5	Chromosome	染色体	0.00000	`XP_057797067.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65620305`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B2,C23,C30
`Chr2:65620323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:65620387`	`AG`	`A`	1bp_deletion	frameshift_variant	7	A15,A4,A9,B134,B74,C51,C67
`Chr2:65620528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:65620570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B7
`Chr2:65622170`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B42
`Chr2:65622170`	`TG`	`T`	1bp_deletion	CDS_variant	1	B42
`Chr2:65622273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr2:65622373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C78
`Chr2:65622503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:65622504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr2:65622511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797067.1

1797 aa

898

1797

FYVE

Cpn60_TCP1

PIP5K

PF01363 FYVE 33-100 aa PF00118 Cpn60_TCP1 400-645 aa PF01504 PIP5K 1539-1705 aa PF01504 PIP5K 1705-1761 aa

XP_057797068.1

1763 aa

882

1763

FYVE

Cpn60_TCP1

PIP5K

PF01363 FYVE 33-100 aa PF00118 Cpn60_TCP1 366-611 aa PF01504 PIP5K 1505-1671 aa PF01504 PIP5K 1671-1727 aa

XP_057797069.1

1751 aa

876

1751

FYVE

Cpn60_TCP1

PIP5K

PF01363 FYVE 33-100 aa PF00118 Cpn60_TCP1 354-599 aa PF01504 PIP5K 1493-1659 aa PF01504 PIP5K 1659-1715 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797067.1`	Pfam	`PF01363`	FYVE	Domain	33	100	6.1e-17	62.2	FYVE zinc finger
`XP_057797067.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	400	645	2.3e-31	109.8	TCP-1/cpn60 chaperonin family
`XP_057797067.1`	Pfam	`PF01504`	PIP5K	Family	1539	1705	2.2e-43	149.3	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057797067.1`	Pfam	`PF01504`	PIP5K	Family	1705	1761	2.2e-43	149.3	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057797068.1`	Pfam	`PF01363`	FYVE	Domain	33	100	6e-17	62.2	FYVE zinc finger
`XP_057797068.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	366	611	2.3e-31	109.8	TCP-1/cpn60 chaperonin family
`XP_057797068.1`	Pfam	`PF01504`	PIP5K	Family	1505	1671	2.3e-43	149.2	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057797068.1`	Pfam	`PF01504`	PIP5K	Family	1671	1727	2.3e-43	149.2	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057797069.1`	Pfam	`PF01363`	FYVE	Domain	33	100	6e-17	62.2	FYVE zinc finger
`XP_057797069.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	354	599	2.2e-31	109.8	TCP-1/cpn60 chaperonin family
`XP_057797069.1`	Pfam	`PF01504`	PIP5K	Family	1493	1659	2.1e-43	149.3	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057797069.1`	Pfam	`PF01504`	PIP5K	Family	1659	1715	2.1e-43	149.3	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941085.1
TTCATTCTCTGTTGTATTTGATTAAATTCCAAGTACAGCCAGCACACATTTAAAGACAGTCCTTTTCTTTCAATTCGAAATGTTGCATTCAAAATTATGGAATTTTGGGCTTACATGTGCGTGATTTCTTTCAATTCAATGCTTATTTTAGCGTCTTTTTGTTTGATCGATTTGATGAGGGAGAAGTTATCGACAAAACTGGGGAAATTGTTGCTGTGATTTTCTTCAATTTGAGGAATGTATTGAATATGCAGCGTCGG...

XM_057941086.1
TTCATTCTCTGTTGTATTTGATTAAATTCCAAGTACAGCCAGCACACATTTAAAGACAGTCCTTTTCTTTCAATTCGAAATGTTGCATTCAAAATTATGGAATTTTGGGCTTACATGTGCGTGATTTCTTTCAATTCAATGCTTATTTTAGCGTCTTTTTGTTTGATCGATTTGATGAGGGAGAAGTTATCGACAAAACTGGGGAAATTGTTGCTGTGATTTTCTTCAATTTGAGGAATGTATTGAATATGCAGCGTCGG...

CDS

3 records

下载 CDS FASTA

LOC131013082
ATGGATTCTCCAAATAGGACATTCCCTGATATAGTAGGTTTGGTAAAGTCTTGGATCCCTTGGCGGTCTGAGCCTGCACATGTTTCGAGGGATTTTTGGATGCCTGATGAGAGTTGCAGGGTATGTTACGAGTGTGATACGCAGTTCACCTTGTTCAACCGTAGGCACCATTGTCGACTCTGTGGTAGAATTTTCTGTTCTAAGTGTACTTTAAACTGCATTCCTACGTTGTCCAGTGAACCAAAGCTTCCACCAGAGGA...

Protein

3 records

下载 Protein FASTA

XP_057797067.1
MDSPNRTFPDIVGLVKSWIPWRSEPAHVSRDFWMPDESCRVCYECDTQFTLFNRRHHCRLCGRIFCSKCTLNCIPTLSSEPKLPPEDWDKIRVCNYCFKLWEQGLTAPVENGNQVAELEHSSSSPSATSFISTMSSNCDSSSMTFVSLPKSVGRSPSIAGASIERQSTAAAMNNDRDVGIGEQNLSQDQLNCLPCRSDDEDAEFGASHLASNYSQVNDYFCNVQFDDIDSNYDSCKAHPDGDTVNSRSMENYPTQSSFNF...

XP_057797068.1
MDSPNRTFPDIVGLVKSWIPWRSEPAHVSRDFWMPDESCRVCYECDTQFTLFNRRHHCRLCGRIFCSKCTLNCIPTLSSEPKLPPEDWDKIRVCNYCFKLWEQGLTAPVENGNQVAELEHSSSSPSATSFISTMSSNCDSSSMTFVSLPKSVGRSPSIAGASIERQSTAAAMNNDRDVGIGEQNLSQDQLNCLPCSNYDSCKAHPDGDTVNSRSMENYPTQSSFNFQASEEAQQVLGKTIENDISDECEAPSSLYVAEDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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