当前解析结果
SmilChr02G004358| 统一新 Gene ID | SmilChr02G004358 |
|---|---|
| 名称 | SmilChr02G004358 |
| 描述 | uncharacterized SmilChr02G004358 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65868832 - 65872699 / - |
| NCBI Gene ID | LOC131013104 |
|---|---|
| GeneID | 131013104 |
| locus_tag | - |
| NCBI Name | LOC131013104 |
| 原始查询 | LOC131013104 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843580]; symbol=AT1G72480; hit=AT1G72480; species=arabidopsis; confidence=high |
| 产物 | Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843580]; symbol=AT1G72480; hit=AT1G72480; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G72480 (AT1G72480)Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843580] identity=73; qcov=0.959; evalue=0; confidence=high |
| Rice | Os09g0439700- identity=67; qcov=0.92; evalue=0; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0006810 (transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF06814 (GOST_TM) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013104 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057797099.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057797099.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057797099.1 |
| 4 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057797099.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057797099.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65869137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr2:65869761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:65869980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B11,C13 |
Chr2:65870592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B114,C54 |
Chr2:65870779 |
TG |
T |
1bp_deletion | frameshift_variant | 6 | B90,B92,B94,B98,C21,C73 |
Chr2:65870783 |
T |
TC |
1bp_insertion | frameshift_variant | 6 | B90,B92,B94,B98,C21,C73 |
Chr2:65870969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr2:65872373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr2:65872386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797099.1PF06814
GOST_TM 210-455 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797099.1 |
Pfam | PF06814 |
GOST_TM | Domain | 210 | 455 | 1.7e-93 | 313.5 | GOST, seven transmembrane domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。