Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004359`

染色体: Chr02 坐标: 65875157-65878437 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004359`
名称	SmilChr02G004359
描述	sm-like protein LSM1B
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65875157 - 65878437 / `-`

ID 对照

NCBI Gene ID	`LOC131013105`
GeneID	`131013105`
locus_tag	`-`
NCBI Name	`LOC131013105`
原始查询	`LOC131013105`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sm-like protein LSM1B
产物	sm-like protein LSM1B
Arabidopsis	`AT3G14080` (LSM1B) Small nuclear ribonucleoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:820624] identity=64.8; qcov=1.17; evalue=5.93e-53; confidence=high
Rice	`Os04g0445800` (LSM1) - identity=58.3; qcov=1.17; evalue=4.35e-46; confidence=medium
GO	GO:0000290 (deadenylation-dependent decapping of nuclear-transcribed mRNA); GO:0000339 (RNA cap binding); GO:0000932 (P-body); GO:1990726 (Lsm1-7-Pat1 complex)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01423 (LSM)
InterPro	-
eggNOG	-
NR	GeneID:131013105

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797100.1`
2	Nucleus	细胞核	1.00000	`XP_057797101.1`
3	Cytoplasmic granule	细胞质颗粒	0.80000	`XP_057797100.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057797100.1`
5	P-body	P-body	0.80000	`XP_057797100.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65876211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B72,B94,C34
`Chr2:65876214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr2:65876224`	`TG`	`T`	1bp_deletion	frameshift_variant	6	A25,B21,B87,C20,C21,C70
`Chr2:65876239`	`C`	`CT`	1bp_insertion	frameshift_variant	3	B6,C10,C21
`Chr2:65876239`	`C`	`CT`	1bp_insertion	CDS_variant	3	B6,C10,C21
`Chr2:65876338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,C21,C48,C70
`Chr2:65876383`	`ACC`	`A`	2bp_deletion	frameshift_variant	4	A10,C4,C42,C80
`Chr2:65876383`	`ACC`	`A`	2bp_deletion	CDS_variant	4	A10,C4,C42,C80
`Chr2:65876389`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	C4
`Chr2:65876389`	`TGG`	`T`	2bp_deletion	CDS_variant	1	C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797100.1

132 aa

132

LSM

PF01423 LSM 18-84 aa

XP_057797101.1

109 aa

109

LSM

PF01423 LSM 25-61 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797100.1`	Pfam	`PF01423`	LSM	Domain	18	84	6.6e-20	71.3	LSM domain
`XP_057797101.1`	Pfam	`PF01423`	LSM	Domain	25	61	4.6e-06	27.0	LSM domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941118.1
TAAAGTAAAGTAAGAGCCAGAAGAAAATTCTCTCCGACCCCCAAAAGAAAAAAGAAAAAGAAAACAATATTTAGAAAGAAAATAATCTCTTCATATTGATATAGAAAAAACAAAATCATGGCAAGCAGCGCAATGACTATGAACTCCTACCGATTTCTGTTTGAAAGTCTCACACATTATTCCACAAATCTGTAGATAGGCCCAATTTCGCCCCTTCCACCTACTTTTAGGGTTTTACTTTTCAGATCTGAACTTCAAGC...

XM_057941117.1
AAAGTAAAGTAAGAGCCAGAAGAAAATTCTCTCCGACCCCCAAAAGAAAAAAGAAAAAGAAAACAATATTTAGAAAGAAAATAATCTCTTCATATTGATATAGAAAAAACAAAATCATGGCAAGCAGCGCAATGACTATGAACTCCTACCGATTTCTGTTTGAAAGTCTCACACATTATTCCACAAATCTGTAGATAGGCCCAATTTCGCCCCTTCCACCTACTTTTAGGGTTTTACTTTTCAGATCTGAACTTCAAGCA...

CDS

2 records

下载 CDS FASTA

LOC131013105
ATGAGTTCATCAATGTCTTGGGCGGAACCAGCGGATGTTTATCTCTCTACTTCTCTTGCCAGTTATCTTGACACTAATGTTGTCCTAGAAGGTGCATGTGAGCGTCTTATTGTTGGTGATCTATATTGTGACATTCCATTAGGTCTATATGTAATCCGTGGGGAAAATGTTGTCTTGATTGGGGAGCTGGACCCGCTGAAGAGGGAACTACCCCCAAATATGGTTCGTGTTTCAGAACCAGAGATAAGAAGTGCACAAAA...

LOC131013105
ATGAGTTCATCAATGTCTTGGGCGGAACCAGCGGATGTTTATCTCTCTACTTCTCTTGCCAGTTATCTTGACAAGAAACTTCTTGTGTTACTTCGAGATGGACGGAAACTTTTAGGGATTCTTCGTTCGTTTGATCAGTTTGCTAATGTTGTCCTAGAAGGTGCATGTGAGCGTCTTATTGTTGGTGATCTATATTGTGACATTCCATTAGGTCTATATGTAATCCGTGGGGAAAATGTTGTCTTGATTGGGGAGCTGGA...

Protein

2 records

下载 Protein FASTA

XP_057797100.1
MSSSMSWAEPADVYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANVVLEGACERLIVGDLYCDIPLGLYVIRGENVVLIGELDPLKRELPPNMVRVSEPEIRSAQKVEREASELMGTMKKRMDFLDMD

XP_057797101.1
MSSSMSWAEPADVYLSTSLASYLDTNVVLEGACERLIVGDLYCDIPLGLYVIRGENVVLIGELDPLKRELPPNMVRVSEPEIRSAQKVEREASELMGTMKKRMDFLDMD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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