Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004384`

染色体: Chr02 坐标: 66185323-66190015 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004384`
名称	SmilChr02G004384
描述	uncharacterized SmilChr02G004384
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66185323 - 66190015 / `+`

ID 对照

NCBI Gene ID	`LOC131013130`
GeneID	`131013130`
locus_tag	`-`
NCBI Name	`LOC131013130`
原始查询	`LOC131013130`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA binding / DNA-directed RNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:820607]; symbol=AT3G13940; hit=AT3G13940; species=arabidopsis; confidence=medium
产物	DNA binding / DNA-directed RNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:820607]; symbol=AT3G13940; hit=AT3G13940; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G13940` (AT3G13940) DNA binding / DNA-directed RNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:820607] identity=41.8; qcov=0.947; evalue=1.5e-107; confidence=medium
Rice	`Os11g0615100` (OsRPA49) - identity=35.6; qcov=0.988; evalue=4.22e-60; confidence=medium
GO	GO:0001188 (RNA polymerase I preinitiation complex assembly); GO:0003677 (DNA binding); GO:0005736 (RNA polymerase I complex); GO:0006362 (transcription elongation by RNA polymerase I); GO:0042790 (nucleolar large rRNA transcription by RNA polymerase I)
KEGG	smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
Pfam	PF06870 (RNA_pol_I_A49)
InterPro	-
eggNOG	-
NR	GeneID:131013130

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797143.1`
2	Nucleolus	核仁	0.80000	`XP_057797143.1`
3	Nucleoplasm	核质	0.60000	`XP_057797143.1`
4	Chromosome	染色体	0.40000	`XP_057797143.1`
5	Centromere	着丝粒	0.00000	`XP_057797143.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66187472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,C37
`Chr2:66187475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B34
`Chr2:66187715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:66187753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr2:66188630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C10,C81
`Chr2:66188745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B137
`Chr2:66189402`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B136,B56,B96,C20
`Chr2:66189403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B95,C14
`Chr2:66189635`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,C58
`Chr2:66189655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,C37
`Chr2:66189703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,C58
`Chr2:66189733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B95,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797143.1

432 aa

216

432

RNA_pol_I_A49

PF06870 RNA_pol_I_A49 72-422 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797143.1`	Pfam	`PF06870`	RNA_pol_I_A49	Family	72	422	1.2e-47	163.3	A49-like RNA polymerase I associated factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941160.1
AAACAAAACAAAACAAAGAATTATCTTGTTTTAAATCATTGCACAAGTCTAATAGGGCGGCCATGAATCCCTATATATAAGCATCACTAACAATACCTGACTCAAACCAAGAAAAAGAAAATGCATATACGTAGGTATGAAAGCAAGATTGGTATAGCTATAGCAATGTTGGTATGGGTGATGATAAATATAGACGTAACGTGTGGTCAGAACATATGCAACATGTCGGGGGAGGATCTGATGGCGTGCAAGCCGTCGGT...

CDS

1 records

下载 CDS FASTA

LOC131013130
ATGGGGAAATCAAAAGAGAAGAAGAATATATCATTGGAAGGAGAAGAGGAGAGCGCAAATGCGAGAATGGAGAAGCAACTGGAAACTCTAGATGTCAAAATCAAGGCAATTAGCGAAAACCTAGAGAGGAAAACCTCACCAATAATCGGATATTTTCCGTCCGGATTTGACCCGTTGAAGAATTCGGAAGAATCGGACTCGAAAGCCGGAGCTAACTGTAGCGTGAAGGTCTACAAGAATCCAAACTCTCGAAACCCCAA...

Protein

1 records

下载 Protein FASTA

XP_057797143.1
MGKSKEKKNISLEGEEESANARMEKQLETLDVKIKAISENLERKTSPIIGYFPSGFDPLKNSEESDSKAGANCSVKVYKNPNSRNPKNPRMEVVVGVGGSAVNFVGTNYSGEARTPQLCNYALGVLDKDTGVLKLVPIAANKIFRLEPKVAGLEQPEIETPDADKEVDTNEEKNFRNVPPIYSTKKDIRKDEKREALRQTEDPGAQEGVGHKLEGIKVKMEALEAMASTANARNIPPHNLEANEAEMAYPLDRIILNGEW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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