当前解析结果
SmilChr02G004390| 统一新 Gene ID | SmilChr02G004390 |
|---|---|
| 名称 | SmilChr02G004390 |
| 描述 | eukaryotic initiation factor 4A-8 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66251435 - 66255580 / + |
| NCBI Gene ID | LOC131013135 |
|---|---|
| GeneID | 131013135 |
| locus_tag | - |
| NCBI Name | LOC131013135 |
| 原始查询 | LOC131013135 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eukaryotic initiation factor 4A-8 |
| 产物 | eukaryotic initiation factor 4A-8 |
| Arabidopsis | AT3G13920 (EIF4A1)eukaryotic translation initiation factor 4A1 [Source:NCBI gene (formerly Entrezgene);Acc:820605] identity=93.3; qcov=0.99; evalue=0; confidence=high |
| Rice | Os02g0146600 (eIF-4a)- identity=93.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0002183 (cytoplasmic translational initiation); GO:0003724 (RNA helicase activity); GO:0003743 (translation initiation factor activity); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0005524 (ATP binding); GO:0010494 (cytoplasmic stress granule) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF13456 (RVT_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013135 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057797147.1 |
| 2 | Nucleus | 细胞核 | 1.00000 | XP_057797148.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057797148.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057797149.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797147.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66251686 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A8,B5,B57,B72,B77,C51 |
Chr2:66251709 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | A20,B125,B17,B21,B4,B52,B81,B90,B92,C20,D3 |
Chr2:66251710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:66251721 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A18,B136,B56,B96,C31,C7 |
Chr2:66251739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B40,C3 |
Chr2:66251751 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | B103,B132,B25,B58,B69,B70,B82,C24,C40,C73,D4 |
Chr2:66251801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,C38,C39,C70 |
Chr2:66251804 |
TA |
T |
1bp_deletion | frameshift_variant | 12 | A7,B108,B109,B121,B34,B40,B50,C14,C23,C3,C7,C80 |
Chr2:66251805 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | B30,B81,C5 |
Chr2:66251805 |
A |
AG |
1bp_insertion | CDS_variant | 3 | B30,B81,C5 |
Chr2:66251820 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B68,B80 |
Chr2:66251820 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B68,B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797147.1PF13456
RVT_3 48-113 aa
PF00270
DEAD 178-340 aa
PF04851
ResIII 196-336 aa
PF00271
Helicase_C 379-487 aa
XP_057797148.1PF00270
DEAD 65-227 aa
PF04851
ResIII 83-223 aa
PF00271
Helicase_C 266-374 aa
XP_057797149.1PF00270
DEAD 46-208 aa
PF04851
ResIII 64-204 aa
PF00271
Helicase_C 247-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797147.1 |
Pfam | PF13456 |
RVT_3 | Domain | 48 | 113 | 9.8e-10 | 39.1 | Reverse transcriptase-like |
XP_057797147.1 |
Pfam | PF00270 |
DEAD | Domain | 178 | 340 | 2.4e-43 | 148.5 | DEAD/DEAH box helicase |
XP_057797147.1 |
Pfam | PF04851 |
ResIII | Family | 196 | 336 | 1.1e-06 | 29.4 | Type III restriction enzyme, res subunit |
XP_057797147.1 |
Pfam | PF00271 |
Helicase_C | Domain | 379 | 487 | 9.3e-34 | 116.7 | Helicase conserved C-terminal domain |
XP_057797148.1 |
Pfam | PF00270 |
DEAD | Domain | 65 | 227 | 1.4e-43 | 149.3 | DEAD/DEAH box helicase |
XP_057797148.1 |
Pfam | PF04851 |
ResIII | Family | 83 | 223 | 5.9e-07 | 30.3 | Type III restriction enzyme, res subunit |
XP_057797148.1 |
Pfam | PF00271 |
Helicase_C | Domain | 266 | 374 | 4.6e-34 | 117.7 | Helicase conserved C-terminal domain |
XP_057797149.1 |
Pfam | PF00270 |
DEAD | Domain | 46 | 208 | 1.2e-43 | 149.5 | DEAD/DEAH box helicase |
XP_057797149.1 |
Pfam | PF04851 |
ResIII | Family | 64 | 204 | 5.2e-07 | 30.4 | Type III restriction enzyme, res subunit |
XP_057797149.1 |
Pfam | PF00271 |
Helicase_C | Domain | 247 | 355 | 3.9e-34 | 117.9 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。