Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004403`

染色体: Chr02 坐标: 66362301-66364636 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004403`
名称	SmilChr02G004403
描述	protein indeterminate-domain 7-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66362301 - 66364636 / `+`

ID 对照

NCBI Gene ID	`LOC131013152`
GeneID	`131013152`
locus_tag	`-`
NCBI Name	`LOC131013152`
原始查询	`LOC131013152`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein indeterminate-domain 7-like
产物	protein indeterminate-domain 7-like
Arabidopsis	`AT1G55110` (IDD7) indeterminate(ID)-domain 7 [Source:NCBI gene (formerly Entrezgene);Acc:841954] identity=46.2; qcov=1.09; evalue=2.98e-119; confidence=high
Rice	`Os01g0195000` (OsIDD2) - identity=55.9; qcov=0.806; evalue=4.36e-110; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131013152

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797171.1`
2	Chromosome	染色体	0.00000	`XP_057797171.1`
3	Centromere	着丝粒	0.00000	`XP_057797171.1`
4	Chromatin	染色质	0.00000	`XP_057797171.1`
5	Telomere	端粒	0.00000	`XP_057797171.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66363790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B34
`Chr2:66364023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:66364093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B11
`Chr2:66364304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,C74,C8,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797171.1

422 aa

211

422

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF22996 C2H2-2nd_BIRD-IDD 96-130 aa PF22995 C2CH-3rd_BIRD-IDD 134-158 aa PF22992 C2CH-4th_BIRD-IDD 161-199 aa

XP_057797172.1

422 aa

211

422

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF22996 C2H2-2nd_BIRD-IDD 96-130 aa PF22995 C2CH-3rd_BIRD-IDD 134-158 aa PF22992 C2CH-4th_BIRD-IDD 161-199 aa

XP_057797173.1

422 aa

211

422

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF22996 C2H2-2nd_BIRD-IDD 96-130 aa PF22995 C2CH-3rd_BIRD-IDD 134-158 aa PF22992 C2CH-4th_BIRD-IDD 161-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797171.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	96	130	1.3e-20	73.8	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057797171.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	134	158	1.8e-14	53.8	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057797171.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	161	199	3.9e-23	81.8	BIRD-IDD transcription factor, fourth C2HC zinc finger
`XP_057797172.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	96	130	1.3e-20	73.8	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057797172.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	134	158	1.8e-14	53.8	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057797172.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	161	199	3.9e-23	81.8	BIRD-IDD transcription factor, fourth C2HC zinc finger
`XP_057797173.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	96	130	1.3e-20	73.8	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057797173.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	134	158	1.8e-14	53.8	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057797173.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	161	199	3.9e-23	81.8	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941189.1
AGATAAGTGGAAGGAAGAAAAAGGTGGAAATTTTAGGAGAAGAGAACAAAGGTAAAGACAGAAAGTGCACGTCAGAGTTTAGCCATAGGGCTGTATATTGTTTTTTTCCTTGGGCTAAGGGTGGATGATTTTGCAGGGCTTCCTTCTCATCCACATCTCTCTCTCTCTCTCTTTCTCTCTCCCCCAAAAGATAAACAATATATATAGAGAGAGAAAAAAATTCGATGTGTTTGAAGATGGTTTCATGTGTTTGTTCTTAC...

XM_057941188.1
AAATTTTAGGAGAAGAGAACAAAGGTAAAGACAGAAAGTGCACGTCAGAGTTTAGCCATAGGGCTGTATATTGTTTTTTTCCTTGGGCTAAGGGTGGATGATTTTGCAGGGCTTCCTTCTCATCCACATCTCTCTCTCTCTCTCTTTCTCTCTCCCCCAAAAGATAAACAATATATATAGAGAGAGAAAAAAATTCGATGTGTTTGAAGATGGTTTCATGTGTTTGTTCTTACATGCATGCCTATAATTGGATTGCCTTG...

CDS

3 records

下载 CDS FASTA

LOC131013152
ATGGAAGAAAATATGTCAAATTTGACTTGTGCATCTGGTGAAGCTAGCTTCTCTTCAAACAATGAAAACAGCTCTCAACAGCCAATGAAGAAAAAGAGAAATCAGCCAGGCCATCCAGACCCTGGAGCTGAAGTGATAGCTCTATCACCGAGAACCCTGATGGCAACAAACAGATTTGTGTGTGATGTATGCAACAAAGGGTTCAAGAGAGACCAAAATCTGCAACTGCACAGAAGAGGGCACAACCTGCCATGGAAGTT...

Protein

3 records

下载 Protein FASTA

XP_057797171.1
MEENMSNLTCASGEASFSSNNENSSQQPMKKKRNQPGHPDPGAEVIALSPRTLMATNRFVCDVCNKGFKRDQNLQLHRRGHNLPWKLKQKSKKEVRRKVYICPEMGCVHHEASRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCECGTLFSRRDSFITHRAFCDALAQESARSNPLQFTSQDNTPFSIKKEHQNLILKHEIPPWLSCSPIIGPPPSSLILEDFQDFPQNSNPNPTSSLGP...

XP_057797172.1
MEENMSNLTCASGEASFSSNNENSSQQPMKKKRNQPGHPDPGAEVIALSPRTLMATNRFVCDVCNKGFKRDQNLQLHRRGHNLPWKLKQKSKKEVRRKVYICPEMGCVHHEASRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCECGTLFSRRDSFITHRAFCDALAQESARSNPLQFTSQDNTPFSIKKEHQNLILKHEIPPWLSCSPIIGPPPSSLILEDFQDFPQNSNPNPTSSLGP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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