Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004421`

染色体: Chr02 坐标: 66529765-66536844 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004421`
名称	SmilChr02G004421
描述	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66529765 - 66536844 / `+`

ID 对照

NCBI Gene ID	`LOC131013172`
GeneID	`131013172`
locus_tag	`-`
NCBI Name	`LOC131013172`
原始查询	`LOC131013172`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
产物	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
Arabidopsis	`AT1G17720` (ATB BETA) Protein phosphatase 2A, regulatory subunit PR55 [Source:NCBI gene (formerly Entrezgene);Acc:838348] identity=81.3; qcov=0.992; evalue=0; confidence=high
Rice	`Os02g0224200` - identity=82.1; qcov=0.963; evalue=0; confidence=high
GO	GO:0000159 (protein phosphatase type 2A complex); GO:0005515 (protein binding); GO:0005829 (cytosol); GO:0019888 (protein phosphatase regulator activity); GO:0070262 (peptidyl-serine dephosphorylation)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131013172

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797205.1`
2	Nucleoplasm	核质	1.00000	`XP_057797205.1`
3	Nuclear body	核内小体	0.20000	`XP_057797205.1`
4	Cytosol	细胞质基质	0.20000	`XP_057797205.1`
5	Vesicle	囊泡	0.20000	`XP_057797205.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66530185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B108,B52,B59,C73
`Chr2:66531933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:66532119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B69,C36,C5
`Chr2:66532120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:66532213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B73,B82,C12,C15,C59
`Chr2:66533016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C10,C81
`Chr2:66535715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:66536143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:66536219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797205.1

518 aa

259

518

WD40

PF00400 WD40 230-265 aa

XP_057797206.1

517 aa

258

517

WD40

PF00400 WD40 229-264 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797205.1`	Pfam	`PF00400`	WD40	Repeat	230	265	2.5e-13	50.6	WD domain, G-beta repeat
`XP_057797206.1`	Pfam	`PF00400`	WD40	Repeat	229	264	2.5e-13	50.6	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941222.1
GCTTTAAGAGGGAGAGAGAGAGAGAAGACAGAGAGAGGCCTTCCCTGAAGTTAAAATAATAGAAACCCAATAAATCGAAAAGAAAAAATAAGTTCCCAAATTTCTCCCCACAGTCTATACATACATACATACACATCCAATATATCTATACATCTAGAGAGAGAGGAAATCTGAATCCTCCATTTTTATTGTACTAATCGATGCTGCATATAAACATACTCTGAGAAATGGCCGAATCTGAATCCAAATTTTCGCTGTTG...

XM_057941223.1
GAGAGAAGACAGAGAGAGGCCTTCCCTGAAGTTAAAATAATAGAAACCCAATAAATCGAAAAGAAAAAATAAGTTCCCAAATTTCTCCCCACAGTCTATACATACATACATACACATCCAATATATCTATACATCTAGAGAGAGAGGAAATCTGAATCCTCCATTTTTATTGTACTAATCGATGCTGCATATAAACATACTCTGAGAAATGGCCGAATCTGAATCCAAATTTTCGCTGTTGCTGCTCCGATCTTCCTCAA...

CDS

2 records

下载 CDS FASTA

LOC131013172
ATGGACAGTGGTGATGGTGGGGAGGTGGCATCAGCTGCGGCCGGTCCACCTACGCCGCTGGAATGGAAATTCTCTCAGGTCTTTGGCGAGCGAGCGGCTGGGGAAGAAGTACAGGAAGTGGATATCATCTCTGCCATTGAGTTTGATAAAAGTGGTGACCATCTGGCTACTGGTGATCGTGGTGGAAGGGTGGTTTTATTTGAACGGACCGATGCAAAAGAGCACGGTGGAAATCGAAGAGATTTAGAGAGGATGGACTA...

Protein

2 records

下载 Protein FASTA

XP_057797205.1
MDSGDGGEVASAAAGPPTPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKEHGGNRRDLERMDYQVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISEINVDSCKAAGNGGIASSSVSSSSKQFLANGDCSDRSYNPLGNDLSFPPGGLPSLRLPVVVTSSETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLR...

XP_057797206.1
MDSGDGGEVASAAAGPPTPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKEHGGNRRDLERMDYQVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISEINVDSCKAAGNGGIASSSVSSSSKQFLANGDCSDRSYNPLGNDLSFPPGGLPSLRLPVVTSSETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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