Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004447`

染色体: Chr02 坐标: 66816892-66823656 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004447`
名称	SmilChr02G004447
描述	homeobox-leucine zipper protein ATHB-15-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66816892 - 66823656 / `-`

ID 对照

NCBI Gene ID	`LOC131013195`
GeneID	`131013195`
locus_tag	`-`
NCBI Name	`LOC131013195`
原始查询	`LOC131013195`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein ATHB-15-like
产物	homeobox-leucine zipper protein ATHB-15-like
Arabidopsis	`AT1G52150` (ATHB-15) Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841645] identity=81.1; qcov=0.929; evalue=0; confidence=high
Rice	`Os03g0640800` (OsHB4) - identity=66.7; qcov=0.926; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF08670 (MEKHLA)
InterPro	-
eggNOG	-
NR	GeneID:131013195

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797242.1`
2	Cytoplasm	细胞质	0.60000	`XP_057797242.1`
3	Cytosol	细胞质基质	0.60000	`XP_057797242.1`
4	Chromosome	染色体	0.00000	`XP_057797242.1`
5	Centromere	着丝粒	0.00000	`XP_057797242.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66817090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,C45,C83
`Chr2:66817648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D3
`Chr2:66817696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B121,B129,C39,C80
`Chr2:66818386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:66818395`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C7
`Chr2:66818395`	`CA`	`C`	1bp_deletion	CDS_variant	1	C7
`Chr2:66818489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr2:66818849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr2:66819375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B121,B129,C39,C80
`Chr2:66819565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr2:66819600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:66819625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B29,B4,C8,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797242.1

844 aa

422

844

Homeodomain

START

MEKHLA

PF00046 Homeodomain 23-81 aa PF01852 START 168-376 aa PF08670 MEKHLA 701-843 aa

XP_057797243.1

808 aa

404

808

Homeodomain

START

MEKHLA

PF00046 Homeodomain 23-81 aa PF01852 START 168-376 aa PF08670 MEKHLA 701-747 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797242.1`	Pfam	`PF00046`	Homeodomain	Domain	23	81	1.4e-15	57.6	Homeodomain
`XP_057797242.1`	Pfam	`PF01852`	START	Domain	168	376	4.1e-53	180.6	START domain
`XP_057797242.1`	Pfam	`PF08670`	MEKHLA	Domain	701	843	2.8e-46	157.7	MEKHLA domain
`XP_057797243.1`	Pfam	`PF00046`	Homeodomain	Domain	23	81	1.3e-15	57.6	Homeodomain
`XP_057797243.1`	Pfam	`PF01852`	START	Domain	168	376	3.7e-53	180.7	START domain
`XP_057797243.1`	Pfam	`PF08670`	MEKHLA	Domain	701	747	9.2e-10	39.3	MEKHLA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941260.1
ATTCCAAATCCAGTGTGTCTTCTGCACACCTCAGTATCAAAGAGAGTATCTCCAAACCCCACACACGCCTATACGTACACCTATACATTCAAACAAACACTAAAAAGTAGTAACAAAAAAGGCAACGATGGGATGAAGAAACCACAGTAACCCAGCTGAAAAACCCACATATTTCAAAGAATTAAACCAATCCGAAATAGTGAAATCACTCTGCTTTTTCCCCTTCCATTTTTCTTTACCAACAACCCCTTTTTCAGTTT...

XM_057941259.1
ATTCCAAATCCAGTGTGTCTTCTGCACACCTCAGTATCAAAGAGAGTATCTCCAAACCCCACACACGCCTATACGTACACCTATACATTCAAACAAACACTAAAAAGTAGTAACAAAAAAGGCAACGATGGGATGAAGAAACCACAGTAACCCAGCTGAAAAACCCACATATTTCAAAGAATTAAACCAATCCGAAATAGTGAAATCACTCTGCTTTTTCCCCTTCCATTTTTCTTTACCAACAACCCCTTTTTCAGTTT...

CDS

2 records

下载 CDS FASTA

LOC131013195
ATGGCAATGTCTTGCAAGGAGAGTAAGGCGGCGGCGGCGGCAGCTGCGGCGGCTTTGGACAACGGCAAGTATGTGCGTTACACGCCGGAGCAGGTTGAAGCCCTCGAGAGGTTGTATCACGACTGTCCAAAGCCGAGCTCTATACGGCGTCAGCAGCTGATTCGTGAATGCCCCATCTTATCCAACATCGAGCCTAAGCAAATCAAAGTTTGGTTTCAAAATAGAAGATGCAGAGAGAAGCAAAGGAAAGAGGCTTCGAG...

Protein

2 records

下载 Protein FASTA

XP_057797242.1
MAMSCKESKAAAAAAAAALDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSYFRQHTQNNALSTKDTSCESVVTSGQQHHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWLRDCRAVDVLNVLPTANGGTIEL...

XP_057797243.1
MAMSCKESKAAAAAAAAALDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSYFRQHTQNNALSTKDTSCESVVTSGQQHHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWLRDCRAVDVLNVLPTANGGTIEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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