Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005885`

染色体: Chr01 坐标: 74763545-74767061 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005885`
名称	SmilChr01G005885
描述	chaperone protein ClpC2, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74763545 - 74767061 / `-`

ID 对照

NCBI Gene ID	`LOC131013207`
GeneID	`131013207`
locus_tag	`-`
NCBI Name	`LOC131013207`
原始查询	`LOC131013207`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein ClpC2, chloroplastic-like
产物	chaperone protein ClpC2%2C chloroplastic-like
Arabidopsis	`AT5G50920` (CLPC1) CLPC homologue 1 [Source:NCBI gene (formerly Entrezgene);Acc:835165] identity=42.5; qcov=0.956; evalue=6.55e-132; confidence=medium
Rice	`Os12g0230100` (CLPC2) - identity=42.7; qcov=0.988; evalue=4.06e-133; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat)
KEGG	-
Pfam	PF00004 (AAA); PF00158 (Sigma54_activat); PF06414 (Zeta_toxin); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF17871 (AAA_lid_9)
InterPro	-
eggNOG	-
NR	GeneID:131013207

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797255.1`
2	Cytosol	细胞质基质	1.00000	`XP_057797255.1`
3	Nucleus	细胞核	0.40000	`XP_057797255.1`
4	Nucleoplasm	核质	0.40000	`XP_057797255.1`
5	Chromosome	染色体	0.00000	`XP_057797255.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74763629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,B126,B128,B7,C4
`Chr1:74763675`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C82
`Chr1:74763675`	`TG`	`T`	1bp_deletion	CDS_variant	1	C82
`Chr1:74763697`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C82
`Chr1:74763697`	`AG`	`A`	1bp_deletion	CDS_variant	1	C82
`Chr1:74763711`	`AAC`	`A`	2bp_deletion	frameshift_variant	1	C82
`Chr1:74763711`	`AAC`	`A`	2bp_deletion	CDS_variant	1	C82
`Chr1:74763715`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C82
`Chr1:74763715`	`T`	`TG`	1bp_insertion	CDS_variant	1	C82
`Chr1:74763734`	`C`	`CAT`	2bp_insertion	frameshift_variant	140	A1,A10,A14,A16,A18,A19,A2,A21,A25,A5,A6,A7,A8,A9,B1,B10,B100,B102,B104,B105,B106,B108,B109,B11,B110,B112,B114,B115,B118,B119,B122,B125,B127,B130,B131,B133,B135,B136,B139,B14,B140,B18,B2,B22,B25,B26,B27,B30,B37,B4,B40,B41,B44,B47,B5,B53,B54,B57,B60,B63,B65,B66,B72,B73,B74,B75,B77,B78,B79,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B9,B90,B92,B95,C10,C11,C12,C13,C14,C17,C19,C21,C22,C23,C26,C27,C28,C29,C3,C32,C34,C37,C38,C4,C40,C41,C42,C45,C46,C49,C5,C50,C52,C57,C58,C59,C6,C61,C64,C66,C67,C68,C69,C71,C75,C78,C8,C80,C84,C85,C87,C9,D1,D10,D11,D2,D3,D4,D6,D7,D9
`Chr1:74763739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr1:74763804`	`CCT`	`C`	2bp_deletion	frameshift_variant	12	A11,B101,B31,B33,B60,B98,C1,C18,C44,C61,C82,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797255.1

519 aa

260

519

AAA_lid_9

Zeta_toxin

AAA_2

Sigma54_activat

AAA_5

AAA

ClpB_D2-small

PF17871 AAA_lid_9 119-183 aa PF06414 Zeta_toxin 249-319 aa PF07724 AAA_2 251-395 aa PF00158 Sigma54_activat 255-394 aa PF07728 AAA_5 257-392 aa PF00004 AAA 257-398 aa PF10431 ClpB_D2-small 401-481 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797255.1`	Pfam	`PF17871`	AAA_lid_9	Domain	119	183	1e-23	83.9	AAA lid domain
`XP_057797255.1`	Pfam	`PF06414`	Zeta_toxin	Domain	249	319	4.8e-07	30.1	Zeta toxin
`XP_057797255.1`	Pfam	`PF07724`	AAA_2	Domain	251	395	8.5e-56	189.3	AAA domain (Cdc48 subfamily)
`XP_057797255.1`	Pfam	`PF00158`	Sigma54_activat	Domain	255	394	2.3e-07	31.4	Sigma-54 interaction domain
`XP_057797255.1`	Pfam	`PF07728`	AAA_5	Domain	257	392	1.6e-15	58.0	AAA domain (dynein-related subfamily)
`XP_057797255.1`	Pfam	`PF00004`	AAA	Domain	257	398	5e-14	53.6	ATPase family associated with various cellular activities (AAA)
`XP_057797255.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	401	481	1.9e-17	63.8	C-terminal, D2-small domain, of ClpB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941272.1
ATGGCGAGGCAGGGACAGCTGCAGAAGTATGCAACTAATATGACTTTGATGGCTGAGAGCCTGAGATGGTACGGAAAGGTGGATGCGGTAATTGGAAGAGAGCAGGAGATGGAGCAATTAATACAAGCTTTGTTGAAGAGACGGAAGAGCAACGCCTGTCTCGTCGGCGCCGCCGGCGTCGGCAAAACCGCCATTGTTGAAGGGCTCGCTCTCAAAATTGCTCAAGGCTCAGTTCCGGATAAGCTCATAGGAAAGATGTG...

CDS

1 records

下载 CDS FASTA

LOC131013207
ATGGCGAGGCAGGGACAGCTGCAGAAGTATGCAACTAATATGACTTTGATGGCTGAGAGCCTGAGATGGTACGGAAAGGTGGATGCGGTAATTGGAAGAGAGCAGGAGATGGAGCAATTAATACAAGCTTTGTTGAAGAGACGGAAGAGCAACGCCTGTCTCGTCGGCGCCGCCGGCGTCGGCAAAACCGCCATTGTTGAAGGGCTCGCTCTCAAAATTGCTCAAGGCTCAGTTCCGGATAAGCTCATAGGAAAGATGTG...

Protein

1 records

下载 Protein FASTA

XP_057797255.1
MARQGQLQKYATNMTLMAESLRWYGKVDAVIGREQEMEQLIQALLKRRKSNACLVGAAGVGKTAIVEGLALKIAQGSVPDKLIGKMCIGATTLEEYTRYIEGDAALKRRFESIHVREPSRDETLTMLKGVIHKYETHHGVKYAETAVISAVDLSKRYLKELHLPDKAIDLIDKAGARAQMLGRALVSGSDVEHVVSACTGIPVAEVSSKASQCLLKLEEALKHRVIGQDEAAAAVSRALLRARAGVTDATKPIGCFLFAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器