Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001546`

染色体: Chr02 坐标: 28726407-28730706 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001546`
名称	SmilChr02G001546
描述	B3 domain-containing transcription repressor VAL1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	28726407 - 28730706 / `+`

ID 对照

NCBI Gene ID	`LOC131013212`
GeneID	`131013212`
locus_tag	`-`
NCBI Name	`LOC131013212`
原始查询	`LOC131013212`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	B3 domain-containing transcription repressor VAL1-like
产物	B3 domain-containing transcription repressor VAL1-like
Arabidopsis	`AT2G30470` (HSI2) B3 domain-containing transcription repressor VAL1 [Source:NCBI gene (formerly Entrezgene);Acc:817597] identity=45.6; qcov=0.789; evalue=8.39e-43; confidence=medium
Rice	`Os07g0679700` (OsVAL2) - identity=47.7; qcov=0.671; evalue=9.04e-43; confidence=medium
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF02362 (B3); PF25813 (zf_VAL1_N)
InterPro	-
eggNOG	-
NR	GeneID:131013212

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797257.1`
2	Chromosome	染色体	0.00000	`XP_057797257.1`
3	Centromere	着丝粒	0.00000	`XP_057797257.1`
4	Chromatin	染色质	0.00000	`XP_057797257.1`
5	Telomere	端粒	0.00000	`XP_057797257.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:28726659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C30
`Chr2:28726973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:28727018`	`A`	`AT`	1bp_insertion	frameshift_variant	5	B105,B14,B67,C43,C58
`Chr2:28727018`	`A`	`AT`	1bp_insertion	CDS_variant	5	B105,B14,B67,C43,C58
`Chr2:28727019`	`AT`	`A`	1bp_deletion	frameshift_variant	95	A1,A11,A15,A21,A22,A24,A25,A4,A5,A8,B101,B104,B107,B110,B113,B119,B120,B125,B128,B13,B130,B131,B133,B136,B140,B15,B19,B25,B27,B28,B29,B35,B37,B38,B39,B41,B42,B43,B44,B5,B50,B51,B54,B56,B64,B66,B68,B70,B76,B8,B82,B86,B87,B89,B9,B90,B92,B96,B97,C10,C12,C13,C15,C17,C18,C2,C21,C22,C26,C28,C3,C30,C31,C32,C33,C50,C52,C54,C55,C59,C62,C63,C65,C68,C73,C75,C79,C80,C83,C85,C87,C9,D10,D8,D9
`Chr2:28727097`	`CTT`	`C`	2bp_deletion	frameshift_variant	5	B105,B14,B67,C43,C58
`Chr2:28727097`	`CTT`	`C`	2bp_deletion	CDS_variant	5	B105,B14,B67,C43,C58
`Chr2:28727105`	`CTG`	`C`	2bp_deletion	frameshift_variant	5	B105,B14,B67,C43,C58
`Chr2:28727105`	`CTG`	`C`	2bp_deletion	CDS_variant	5	B105,B14,B67,C43,C58
`Chr2:28728011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B37,C63
`Chr2:28728034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr2:28729128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797257.1

308 aa

154

308

zf_VAL1_N

PF25813 zf_VAL1_N 69-115 aa PF02362 B3 173-273 aa

XP_057797258.1

306 aa

153

306

zf_VAL1_N

PF25813 zf_VAL1_N 69-115 aa PF02362 B3 171-271 aa

XP_057797259.1

299 aa

150

299

zf_VAL1_N

PF25813 zf_VAL1_N 60-106 aa PF02362 B3 164-264 aa

XP_057797260.1

283 aa

142

283

zf_VAL1_N

PF25813 zf_VAL1_N 69-115 aa PF02362 B3 173-273 aa

XP_057797261.1

274 aa

137

274

zf_VAL1_N

PF25813 zf_VAL1_N 60-106 aa PF02362 B3 164-264 aa

XP_057797262.1

272 aa

136

272

zf_VAL1_N

PF25813 zf_VAL1_N 60-106 aa PF02362 B3 162-262 aa

XP_057797263.1

253 aa

126

253

zf_VAL1_N

PF25813 zf_VAL1_N 14-60 aa PF02362 B3 118-218 aa

XP_057797264.1

228 aa

114

228

zf_VAL1_N

PF25813 zf_VAL1_N 14-60 aa PF02362 B3 118-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797257.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	69	115	7.8e-22	77.7	VAL1-like, N-terminal zinc finger domain
`XP_057797257.1`	Pfam	`PF02362`	B3	Domain	173	273	1.5e-12	48.0	B3 DNA binding domain
`XP_057797258.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	69	115	7.7e-22	77.7	VAL1-like, N-terminal zinc finger domain
`XP_057797258.1`	Pfam	`PF02362`	B3	Domain	171	271	1.5e-12	48.0	B3 DNA binding domain
`XP_057797259.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	60	106	1.3e-21	76.9	VAL1-like, N-terminal zinc finger domain
`XP_057797259.1`	Pfam	`PF02362`	B3	Domain	164	264	1.3e-12	48.3	B3 DNA binding domain
`XP_057797260.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	69	115	7.2e-22	77.8	VAL1-like, N-terminal zinc finger domain
`XP_057797260.1`	Pfam	`PF02362`	B3	Domain	173	273	1.3e-12	48.2	B3 DNA binding domain
`XP_057797261.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	60	106	1.2e-21	77.1	VAL1-like, N-terminal zinc finger domain
`XP_057797261.1`	Pfam	`PF02362`	B3	Domain	164	264	1e-12	48.5	B3 DNA binding domain
`XP_057797262.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	60	106	1.2e-21	77.1	VAL1-like, N-terminal zinc finger domain
`XP_057797262.1`	Pfam	`PF02362`	B3	Domain	162	262	1e-12	48.6	B3 DNA binding domain
`XP_057797263.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	14	60	6.2e-22	78.0	VAL1-like, N-terminal zinc finger domain
`XP_057797263.1`	Pfam	`PF02362`	B3	Domain	118	218	1e-12	48.5	B3 DNA binding domain
`XP_057797264.1`	Pfam	`PF25813`	zf_VAL1_N	Domain	14	60	5.6e-22	78.1	VAL1-like, N-terminal zinc finger domain
`XP_057797264.1`	Pfam	`PF02362`	B3	Domain	118	218	8.4e-13	48.8	B3 DNA binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057941278.1
AATAAATAAAATATTGTCTTTTCAATTTCCCCGTTCTATTAAAATTATTAAATAATTAGAGTGTTAGTGACAGTCTAACCCAATCTTTGTATGCTTCTCCACTGTAATTTTCTAACACACACTTAGCTCGCATACTCTCAGTTTCAACCTCAATCTAGGGTTCTCTAATACCATGGCTGCTGCTGCTGCTGCTTCTTCTTCTTCGTCCTCAAGAATGTCGTGCTTCCAGTGCCAGGATTCCAGCTTCAATCACGCCAATT...

XM_057941279.1
AATAAATAAAATATTGTCTTTTCAATTTCCCCGTTCTATTAAAATTATTAAATAATTAGAGTGTTAGTGACAGTCTAACCCAATCTTTGTATGCTTCTCCACTGTAATTTTCTAACACACACTTAGCTCGCATACTCTCAGTTTCAACCTCAATCTAGGGTTCTCTAATACCATGGCTGCTGCTGCTGCTGCTTCTTCTTCTTCGTCCTCAAGAATGTCGTGCTTCCAGTGCCAGGATTCCAGCTTCAATCACGCCAATT...

CDS

8 records

下载 CDS FASTA

LOC131013212
ATGGCTGCTGCTGCTGCTGCTTCTTCTTCTTCGTCCTCAAGAATGTCGTGCTTCCAGTGCCAGGATTCCAGCTTCAATCACGCCAATTTCAGAAACGGCTGGCGCCTCCGCAGCGGCGAGTTCGCTCAGCTCTGCCCCCGCTGCGCTTCTGCGTATGATGATGGAAGATTCTGTGAGACCTTCCATTCAAATGATGATGGTTGGAGGGACTGTGGATCTTGTGGAAAGTTAGTCCATTGCGGATGTATTGTATCTTTCAG...

Protein

8 records

下载 Protein FASTA

XP_057797257.1
MFGLWWRQLRAVFVCLFVKETTVIEFFLSFHFMPCLDLALDQNYCAPLVHFFKTVDQRSAYDDGRFCETFHSNDDGWRDCGSCGKLVHCGCIVSFSTHLLLDFGGIICMECSRLNFLLARKRCMSLEPEVRAREHRPESSGQAPVEAQNWPQVTDSELQKVSRNPRATVTPLFEKILSASDADLKLARLIIPKRCAENFFPDISGLHGLRIKIQDIDGNEWEFHYRYWLNGGSRIYVLEGLRDYMVSKKWQSGDTVTFYR...

XP_057797258.1
MFGLWWRQLRAVFVCLFVKETTVIEFFLSFHFMPCLDLALDQNYCAPLVHFFKTVDQRSAYDDGRFCETFHSNDDGWRDCGSCGKLVHCGCIVSFSTHLLLDFGGIICMECSRLNFLLARKRCMSLEPEVRAREHRPESSGQAPVEAQNWPQVTDSELQKVSRKATVTPLFEKILSASDADLKLARLIIPKRCAENFFPDISGLHGLRIKIQDIDGNEWEFHYRYWLNGGSRIYVLEGLRDYMVSKKWQSGDTVTFYRVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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