当前解析结果
SmilChr01G005893| 统一新 Gene ID | SmilChr01G005893 |
|---|---|
| 名称 | SmilChr01G005893 |
| 描述 | probable disease resistance protein RXW24L |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74865435 - 74866664 / - |
| NCBI Gene ID | LOC131013219 |
|---|---|
| GeneID | 131013219 |
| locus_tag | - |
| NCBI Name | LOC131013219 |
| 原始查询 | LOC131013219 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein RXW24L |
| 产物 | probable disease resistance protein RXW24L |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=24.8; qcov=1.06; evalue=1.04e-14; confidence=weak |
| Rice | Os07g0186500- identity=26.1; qcov=0.929; evalue=3.65e-12; confidence=low |
| GO | GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013219 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057797280.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057797280.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057797280.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797280.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74865506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:74865585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B65,C42 |
Chr1:74865626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,B74 |
Chr1:74865649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B114,B38,B39,C31 |
Chr1:74865677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,B73,B74 |
Chr1:74865702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B131,C11,C56 |
Chr1:74865704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,D5 |
Chr1:74865718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,B73,B74 |
Chr1:74865728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B74 |
Chr1:74865731 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B110,D4 |
Chr1:74865731 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B110,D4 |
Chr1:74865739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B28,B73,C54,C9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。