当前解析结果
SmilChr02G001553| 统一新 Gene ID | SmilChr02G001553 |
|---|---|
| 名称 | SmilChr02G001553 |
| 描述 | receptor-like protein kinase THESEUS 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 28829532 - 28834237 / - |
| NCBI Gene ID | LOC131013220 |
|---|---|
| GeneID | 131013220 |
| locus_tag | - |
| NCBI Name | LOC131013220 |
| 原始查询 | LOC131013220 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase THESEUS 1 |
| 产物 | receptor-like protein kinase THESEUS 1 |
| Arabidopsis | AT5G54380 (THE1)protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835526] identity=73; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0334300 (OsCrRLK1L14)- identity=52.1; qcov=1; evalue=0; confidence=high |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013220 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797277.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797277.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797277.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797277.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797277.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:28831119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr2:28831188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:28831203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B64 |
Chr2:28831341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B124,B22,B74,C25 |
Chr2:28831377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,D4 |
Chr2:28831596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
Chr2:28832013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:28832739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B49,B91,C1 |
Chr2:28832833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:28833007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:28833138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:28833222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797277.1PF12819
Malectin_like 36-384 aa
PF00069
Pkinase 501-765 aa
PF07714
PK_Tyr_Ser-Thr 504-766 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797277.1 |
Pfam | PF12819 |
Malectin_like | Domain | 36 | 384 | 1.9e-29 | 103.7 | Malectin-like domain |
XP_057797277.1 |
Pfam | PF00069 |
Pkinase | Domain | 501 | 765 | 3.2e-41 | 142.2 | Protein kinase domain |
XP_057797277.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 504 | 766 | 9.3e-47 | 160.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。