Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001565`

染色体: Chr02 坐标: 28967354-28969139 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001565`
名称	SmilChr02G001565
描述	uncharacterized SmilChr02G001565
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	28967354 - 28969139 / `+`

ID 对照

NCBI Gene ID	`LOC131013225`
GeneID	`131013225`
locus_tag	`-`
NCBI Name	`LOC131013225`
原始查询	`LOC131013225`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835528]; symbol=AT5G54400; hit=AT5G54400; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835528]; symbol=AT5G54400; hit=AT5G54400; species=arabidopsis; confidence=high
Arabidopsis	`AT5G54400` (AT5G54400) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835528] identity=72.6; qcov=1.01; evalue=1.48e-151; confidence=high
Rice	`-` -
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131013225

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057797282.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057797282.1`
3	Mitochondrion	线粒体	0.20000	`XP_057797282.1`
4	Mitochondrion membrane	线粒体膜	0.20000	`XP_057797282.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057797282.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:28968012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:28968013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C1,C60,C7
`Chr2:28968043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr2:28968062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C12
`Chr2:28968163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr2:28968267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:28968662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797282.1

288 aa

144

288

Methyltransf_31

Methyltransf_25

Methyltransf_11

PF13847 Methyltransf_31 116-244 aa PF13649 Methyltransf_25 117-225 aa PF08241 Methyltransf_11 117-227 aa

XP_057797283.1

288 aa

144

288

Methyltransf_31

Methyltransf_25

Methyltransf_11

PF13847 Methyltransf_31 116-244 aa PF13649 Methyltransf_25 117-225 aa PF08241 Methyltransf_11 117-227 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797282.1`	Pfam	`PF13847`	Methyltransf_31	Domain	116	244	2.6e-09	37.7	Methyltransferase domain
`XP_057797282.1`	Pfam	`PF13649`	Methyltransf_25	Domain	117	225	2.2e-09	38.6	Methyltransferase domain
`XP_057797282.1`	Pfam	`PF08241`	Methyltransf_11	Domain	117	227	6.4e-13	49.9	Methyltransferase domain
`XP_057797283.1`	Pfam	`PF13847`	Methyltransf_31	Domain	116	244	2.6e-09	37.7	Methyltransferase domain
`XP_057797283.1`	Pfam	`PF13649`	Methyltransf_25	Domain	117	225	2.2e-09	38.6	Methyltransferase domain
`XP_057797283.1`	Pfam	`PF08241`	Methyltransf_11	Domain	117	227	6.4e-13	49.9	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941299.1
ATTCTTGTGTCTTAACTCTTACACATTTTTCTAAAATTTAGAACATGTCAACACAATATAATCAAAGTTGAGAGTCCAACACACATTTTACTCAACCAACCTCCTTAGATCTTTTCTTCTCCTATTATAGACCTACAAAAAACACTCACATATATATATAGGTAGGCCGAGGCGTATATGTATATGGAAGTATGTGAGTGTAAGTAGTAATCCAATTCAATAATCTCCAAAGAAAACAAAGAAAGTTGAAACTCCCTTTC...

XM_057941300.1
TCCTTAGATCTTTTCTTCTCCTATTATAGACCTACAAAAAACACTCACATATATATATAGGTAGGCCGAGGCGTATATGTATATGGAAGTATGTGAGTGTAAGTAGTAATCCAATTCAATAATCTCCAAAGAAAACAAAGAAAGTTGAAACTCCCTTTCCATATTGGAAGAAGGGAATCGCCAAAACGCGTGATTGCGTAATCCAAAGAAGCAAGAGATTCAACAATCCCTTTCACTTTTCACTATAAGACTAGGATTTA...

CDS

2 records

下载 CDS FASTA

LOC131013225
ATGGGGAAAACCGGGAGGGATTGGACGCAGATCTACGCGATCTACGGCGTGGACGACTGGCAGACGCCGCTGTTCCTGGTGGTGAACGCGGTGGGCTTCGCCGCCCTCTCCGTCGTCTTCCTCCTCTACTTCGAGCCCATCTGTCTGCTCCTGCAGCAGCACCACTTCCTCCCGGGCCCCGCCGCGGCCCGCTTCGCCGCCGGCTTCACGGGCTCCGTCACGGCCCTCTCCGCCGTCTGCCTCCTCTTCGCCGCCGGAAA...

Protein

2 records

下载 Protein FASTA

XP_057797282.1
MGKTGRDWTQIYAIYGVDDWQTPLFLVVNAVGFAALSVVFLLYFEPICLLLQQHHFLPGPAAARFAAGFTGSVTALSAVCLLFAAGNFFYSAVALHWEMSQRIVSSVPDWSSVKYALDLGCGRGILLNAVALQLKKSGSSGRVVGLSRSPNHTLRTAGLEGVQEYVTCRPGDPRTLPFSDSYFDVVVSAAFVHTVGKEFGQKTAAAAAERMRVLGEVVRVLKAGGVGVVWDLVHAEEYVQRLSELKMEEIRVSERVTAFM...

XP_057797283.1
MGKTGRDWTQIYAIYGVDDWQTPLFLVVNAVGFAALSVVFLLYFEPICLLLQQHHFLPGPAAARFAAGFTGSVTALSAVCLLFAAGNFFYSAVALHWEMSQRIVSSVPDWSSVKYALDLGCGRGILLNAVALQLKKSGSSGRVVGLSRSPNHTLRTAGLEGVQEYVTCRPGDPRTLPFSDSYFDVVVSAAFVHTVGKEFGQKTAAAAAERMRVLGEVVRVLKAGGVGVVWDLVHAEEYVQRLSELKMEEIRVSERVTAFM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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