当前解析结果
SmilChr02G001569| 统一新 Gene ID | SmilChr02G001569 |
|---|---|
| 名称 | SmilChr02G001569 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 29100652 - 29104508 / - |
| NCBI Gene ID | LOC131013227 |
|---|---|
| GeneID | 131013227 |
| locus_tag | - |
| NCBI Name | LOC131013227 |
| 原始查询 | LOC131013227 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=43.2; qcov=0.944; evalue=0; confidence=medium |
| Rice | Os01g0784200- identity=41; qcov=1.04; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013227 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797288.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797288.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797288.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797288.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797288.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:29100917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr2:29101688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:29101689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:29101712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr2:29101723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B64 |
Chr2:29101992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C10 |
Chr2:29102237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr2:29102446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,D4 |
Chr2:29102839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B7,B84 |
Chr2:29103000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B7,B84,C82 |
Chr2:29103113 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C6 |
Chr2:29103113 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797288.1PF01453
B_lectin 88-192 aa
PF00954
S_locus_glycop 225-332 aa
PF08276
PAN_2 353-419 aa
PF00069
Pkinase 511-719 aa
PF07714
PK_Tyr_Ser-Thr 513-746 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797288.1 |
Pfam | PF01453 |
B_lectin | Repeat | 88 | 192 | 1.3e-30 | 106.7 | D-mannose binding lectin |
XP_057797288.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 225 | 332 | 4.3e-15 | 56.9 | S-locus glycoprotein domain |
XP_057797288.1 |
Pfam | PF08276 |
PAN_2 | Domain | 353 | 419 | 2.6e-18 | 66.6 | PAN-like domain |
XP_057797288.1 |
Pfam | PF00069 |
Pkinase | Domain | 511 | 719 | 3.3e-45 | 155.3 | Protein kinase domain |
XP_057797288.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 513 | 746 | 5.3e-49 | 167.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。