Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001572`

染色体: Chr02 坐标: 29148385-29153062 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001572`
名称	SmilChr02G001572
描述	protein SYM1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	29148385 - 29153062 / `+`

ID 对照

NCBI Gene ID	`LOC131013231`
GeneID	`131013231`
locus_tag	`-`
NCBI Name	`LOC131013231`
原始查询	`LOC131013231`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein SYM1-like
产物	protein SYM1-like
Arabidopsis	`AT1G52870` (AT1G52870) Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841720] identity=65.3; qcov=1.03; evalue=3.55e-161; confidence=high
Rice	`Os03g0583800` (OJ1785_A05.29) - identity=81.7; qcov=0.668; evalue=1.94e-149; confidence=high
GO	GO:0005737 (cytoplasm); GO:0016020 (membrane)
KEGG	smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF04117 (Mpv17_PMP22)
InterPro	-
eggNOG	-
NR	GeneID:131013231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057797290.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057797290.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057797290.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057797290.1`
5	Nucleus	细胞核	0.00000	`XP_057797290.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:29148637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr2:29148771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:29148845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:29148866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr2:29150009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr2:29150073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:29150102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,B64
`Chr2:29150111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr2:29150276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B53,B71,C27,C83
`Chr2:29150281`	`GC`	`G`	1bp_deletion	frameshift_variant	21	A18,A9,B137,B37,B40,B51,B53,B57,B58,B64,B84,B85,B90,B97,C20,C32,C4,C65,C74,C8,D1
`Chr2:29150526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797290.1

360 aa

180

360

Mpv17_PMP22

PF04117 Mpv17_PMP22 261-321 aa

XP_057797291.1

352 aa

176

352

Mpv17_PMP22

PF04117 Mpv17_PMP22 261-321 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797290.1`	Pfam	`PF04117`	Mpv17_PMP22	Family	261	321	4.5e-18	65.8	Mpv17 / PMP22 family
`XP_057797291.1`	Pfam	`PF04117`	Mpv17_PMP22	Family	261	321	4.3e-18	65.8	Mpv17 / PMP22 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009097596.1
AAGAGTGTAGATTCTTCTTCTTCTTCTTTTGGCTATAGAAAAGTGTAGAATTAAATACCTAGAATTTAAAAACATAAATGAGACACAAAGACACTCGAAACCGGAATCACTCGATCCTGACCCCACTAACCAATCTTGAGGAGCTGTCATCTTAAACTACCACTCCGGTTGACTCAAATCAGATTCATCCACAACATTCGAATCGAATCTCCCTCTCTCCCATCGCCGGCGCAAGGCCACCACAATGGCCGCCGCCATCA...

XR_009097597.1
TAGAAAAGTGTAGAATTAAATACCTAGAATTTAAAAACATAAATGAGACACAAAGACACTCGAAACCGGAATCACTCGATCCTGACCCCACTAACCAATCTTGAGGAGCTGTCATCTTAAACTACCACTCCGGTTGACTCAAATCAGATTCATCCACAACATTCGAATCGAATCTCCCTCTCTCCCATCGCCGGCGCAAGGCCACCACAATGGCCGCCGCCATCACTCAACCACTCCTTTCTCTCTCCAAACCCAAGCCC...

CDS

2 records

下载 CDS FASTA

LOC131013231
ATGGCCGCCGCCATCACTCAACCACTCCTTTCTCTCTCCAAACCCAAGCCCTCCTCTCTCTTCAAACCCCTTCCCGCCACCGCCAAGATCCTCCCCAGACCCAACCTCAAAAAGCAATCTTTGCAGCTGGTGAGATCAGTGGCCAACGATTTCGACCTCATACCCGTAAAGATCGACGACCAACCGGACGGCGTCGTTTTCGCGGAGAGGGAAGCCGATCCCGCGGAGGTCGGGGGTTTCGGGACCGAGAGGCTGTCATT...

Protein

2 records

下载 Protein FASTA

XP_057797290.1
MAAAITQPLLSLSKPKPSSLFKPLPATAKILPRPNLKKQSLQLVRSVANDFDLIPVKIDDQPDGVVFAEREADPAEVGGFGTERLSFEGAAGFLSAASGDGSSEEEMERLSDRAINATIVLAAGSFAITKLLTIDHDYWHGWTLFEIVRYLPQHNWSAYEEALKTNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEFDRARMFRSGLLGFTLHGSLSHYYYQFCEALFPFHDWWVVPVKVIFDQTAWSAVWNSIYYVLLG...

XP_057797291.1
MAAAITQPLLSLSKPKPSSLFKPLPATAKILPRPNLKKQSLQLVRSVANDFDLIPVKIDDQPDGVVFAEREADPAEVGGFGTERLSFEGAAGFLSAASGDGSSEEEMERLSDRAINATIVLAAGSFAITKLLTIDHDYWHGWTLFEIVRYLPQHNWSAYEEALKTNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEFDRARMFRSGLLGFTLHGSLSHYYYQFCEALFPFHDWWVVPVKVIFDQTAWSAVWNSIYYVLLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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