Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001591

染色体: Chr02 坐标: 29677481-29680344 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001591
名称SmilChr02G001591
描述ABC transporter G family member 9-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向29677481 - 29680344 / -

ID 对照

NCBI Gene IDLOC131013247
GeneID131013247
locus_tag-
NCBI NameLOC131013247
原始查询LOC131013247

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ABC transporter G family member 9-like
产物ABC transporter G family member 9-like
ArabidopsisAT4G27420 (ABCG9)
ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:828850]
identity=62.3; qcov=0.997; evalue=0; confidence=high
RiceOs03g0157400 (OsABCG4)
-
identity=47.2; qcov=1.02; evalue=0; confidence=high
GOGO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity)
KEGGsmil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF00005 (ABC_tran); PF01061 (ABC2_membrane); PF19055 (ABC2_membrane_7)
InterPro-
eggNOG-
NRGeneID:131013247

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057797301.1
2 Vacuole 液泡 0.20000 XP_057797301.1
3 Nucleus 细胞核 0.00000 XP_057797301.1
4 Chromosome 染色体 0.00000 XP_057797301.1
5 Centromere 着丝粒 0.00000 XP_057797301.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:29677630 C T EMS_canonical_SNV CDS_variant 1 C71
Chr2:29677747 C T EMS_canonical_SNV CDS_variant 2 B135,B98
Chr2:29677814 C T EMS_canonical_SNV CDS_variant 2 B131,C71
Chr2:29677888 G A EMS_canonical_SNV CDS_variant 1 C71
Chr2:29677897 G A EMS_canonical_SNV CDS_variant 1 B107
Chr2:29677958 G A EMS_canonical_SNV CDS_variant 1 B74
Chr2:29677987 C T EMS_canonical_SNV CDS_variant 3 B75,C60,C76
Chr2:29678078 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:29678194 C T EMS_canonical_SNV CDS_variant 1 C71
Chr2:29678200 C T EMS_canonical_SNV CDS_variant 4 A22,B37,B6,C63
Chr2:29678666 C T EMS_canonical_SNV CDS_variant 1 B135
Chr2:29678805 C T EMS_canonical_SNV CDS_variant 2 B112,C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797301.1
617 aa
N
1
308
617
ABC_tran
ABC2_membrane_7
ABC2_membrane_7
ABC2_membrane
C
PF00005 ABC_tran 56-206 aa PF19055 ABC2_membrane_7 235-301 aa PF19055 ABC2_membrane_7 301-565 aa PF01061 ABC2_membrane 350-555 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797301.1 Pfam PF00005 ABC_tran Domain 56 206 8.5e-27 95.1 ABC transporter
XP_057797301.1 Pfam PF19055 ABC2_membrane_7 Family 235 301 2.6e-16 60.3 ABC-2 type transporter
XP_057797301.1 Pfam PF19055 ABC2_membrane_7 Family 301 565 2.6e-16 60.3 ABC-2 type transporter
XP_057797301.1 Pfam PF01061 ABC2_membrane Domain 350 555 1.6e-44 152.7 ABC-2 type transporter

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057941318.1
GTATGAGAGCAAGAAAACCTAGAAGCGAGAAACTCTATTTAAAACCCAAAGAATGTGATGAAATCGAATTTATATTTGTTTTCCATTCCTAGAAAGAAGAAACATTAATCGGTGGGGGAAGAAACAAAACCATGATATAGAGATCAGGCAGGAAATCGGGCGGAGAGAGAGAGGAATTAACCGGCCACAATAAAAGCAGGCTTAAAGTGGAGTAAGCCCATCATAATCTGGTGTATAGAGTTTACGCGCTGCCGGAGATG...

CDS

1 records

下载 CDS FASTA
LOC131013247
ATGGCCGACCTCGAGGCGCACAATCACCCCCAAATTTCTCCGGCCATTTTTAACCGACCCAATCTCCCCGTCACTCTCAAGTTCGATGAGGTGGTTTACAGGATCAGGATCGCGGCGGGGGGAGGCTTGTTGAAGAAGAAAACAAAATCAGAAGAGAGAGTAATACTGAAAGGAATTTCGGGCATGGTGCTGCCCGGGGAAATGCTGGCGATGCTGGGGCCGTCGGGCAGCGGCAAGACGACGCTGCTGACCGCCCTCGG...

Protein

1 records

下载 Protein FASTA
XP_057797301.1
MADLEAHNHPQISPAIFNRPNLPVTLKFDEVVYRIRIAAGGGLLKKKTKSEERVILKGISGMVLPGEMLAMLGPSGSGKTTLLTALGGRLGGHLAGSITYNGKPFSNAMKRNTGFVTQDDVLYPHLTVTETLVYTALLRLPRTLSKGEKAEHAEAVIAQLGLSRCRNSIIGGPFLGGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQKIVSTLWELANGGRTVVKTIHQPSSRLFYMFHKVLLLSEGNPLYFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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