当前解析结果
SmilChr02G001591| 统一新 Gene ID | SmilChr02G001591 |
|---|---|
| 名称 | SmilChr02G001591 |
| 描述 | ABC transporter G family member 9-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 29677481 - 29680344 / - |
| NCBI Gene ID | LOC131013247 |
|---|---|
| GeneID | 131013247 |
| locus_tag | - |
| NCBI Name | LOC131013247 |
| 原始查询 | LOC131013247 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 9-like |
| 产物 | ABC transporter G family member 9-like |
| Arabidopsis | AT4G27420 (ABCG9)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:828850] identity=62.3; qcov=0.997; evalue=0; confidence=high |
| Rice | Os03g0157400 (OsABCG4)- identity=47.2; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013247 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797301.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057797301.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797301.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797301.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:29677630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29677747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:29677814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C71 |
Chr2:29677888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29677897 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:29677958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:29677987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,C60,C76 |
Chr2:29678078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:29678194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29678200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B37,B6,C63 |
Chr2:29678666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:29678805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797301.1PF00005
ABC_tran 56-206 aa
PF19055
ABC2_membrane_7 235-301 aa
PF19055
ABC2_membrane_7 301-565 aa
PF01061
ABC2_membrane 350-555 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797301.1 |
Pfam | PF00005 |
ABC_tran | Domain | 56 | 206 | 8.5e-27 | 95.1 | ABC transporter |
XP_057797301.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 235 | 301 | 2.6e-16 | 60.3 | ABC-2 type transporter |
XP_057797301.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 301 | 565 | 2.6e-16 | 60.3 | ABC-2 type transporter |
XP_057797301.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 350 | 555 | 1.6e-44 | 152.7 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。