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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001627

染色体: Chr02 坐标: 30215940-30226165 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001627
名称SmilChr02G001627
描述plant intracellular Ras-group-related LRR protein 6-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向30215940 - 30226165 / -

ID 对照

NCBI Gene IDLOC131013275
GeneID131013275
locus_tag-
NCBI NameLOC131013275
原始查询LOC131013275

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述plant intracellular Ras-group-related LRR protein 6-like
产物plant intracellular Ras-group-related LRR protein 6-like
ArabidopsisAT3G15410 (AT3G15410)
Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820780]
identity=63.7; qcov=1.01; evalue=0; confidence=high
RiceOs02g0826600 (OsIRL6)
-
identity=61.2; qcov=1.01; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131013275

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057797317.1
2 Cytosol 细胞质基质 0.80000 XP_057797317.1
3 Nucleus 细胞核 0.20000 XP_057797317.1
4 Cytoskeleton 细胞骨架 0.20000 XP_057797317.1
5 Chromosome 染色体 0.00000 XP_057797320.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:30216817 C T EMS_canonical_SNV CDS_variant 2 B6,C67
Chr2:30216843 G A EMS_canonical_SNV CDS_variant 1 B82
Chr2:30220552 G A EMS_canonical_SNV CDS_variant 1 C79
Chr2:30220630 G A EMS_canonical_SNV CDS_variant 1 B13
Chr2:30220746 C T EMS_canonical_SNV CDS_variant 2 B107,D10
Chr2:30220747 G A EMS_canonical_SNV CDS_variant 2 B107,D10
Chr2:30220748 G A EMS_canonical_SNV CDS_variant 2 B107,D10
Chr2:30220756 G A EMS_canonical_SNV CDS_variant 1 B13
Chr2:30220836 G A EMS_canonical_SNV CDS_variant 2 B129,B91
Chr2:30221495 G A EMS_canonical_SNV CDS_variant 3 B127,B135,B98
Chr2:30223252 G A EMS_canonical_SNV CDS_variant 3 B10,B119,C38
Chr2:30223692 G A EMS_canonical_SNV CDS_variant 3 B82,B94,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797317.1
604 aa
N
1
302
604
LRR_8
LRR_14
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_8
LRR_8
LRR_1
C
PF13855 LRR_8 66-123 aa PF23598 LRR_14 82-203 aa PF00560 LRR_1 89-109 aa PF00560 LRR_1 135-156 aa PF13855 LRR_8 181-239 aa PF13855 LRR_8 231-285 aa PF00560 LRR_1 296-314 aa PF13855 LRR_8 426-481 aa PF13855 LRR_8 520-578 aa PF00560 LRR_1 543-562 aa
XP_057797318.1
604 aa
N
1
302
604
LRR_8
LRR_14
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_8
LRR_8
LRR_1
C
PF13855 LRR_8 66-123 aa PF23598 LRR_14 82-203 aa PF00560 LRR_1 89-109 aa PF00560 LRR_1 135-156 aa PF13855 LRR_8 181-239 aa PF13855 LRR_8 231-285 aa PF00560 LRR_1 296-314 aa PF13855 LRR_8 426-481 aa PF13855 LRR_8 520-578 aa PF00560 LRR_1 543-562 aa
XP_057797319.1
604 aa
N
1
302
604
LRR_8
LRR_14
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_8
LRR_8
LRR_1
C
PF13855 LRR_8 66-123 aa PF23598 LRR_14 82-203 aa PF00560 LRR_1 89-109 aa PF00560 LRR_1 135-156 aa PF13855 LRR_8 181-239 aa PF13855 LRR_8 231-285 aa PF00560 LRR_1 296-314 aa PF13855 LRR_8 426-481 aa PF13855 LRR_8 520-578 aa PF00560 LRR_1 543-562 aa
XP_057797320.1
579 aa
N
1
290
579
LRR_8
LRR_14
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_8
LRR_1
C
PF13855 LRR_8 66-123 aa PF23598 LRR_14 82-184 aa PF00560 LRR_1 89-109 aa PF00560 LRR_1 135-156 aa PF13855 LRR_8 206-260 aa PF00560 LRR_1 271-289 aa PF13855 LRR_8 401-456 aa PF13855 LRR_8 495-553 aa PF00560 LRR_1 518-537 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797317.1 Pfam PF13855 LRR_8 Repeat 66 123 3.9e-45 152.2 Leucine rich repeat
XP_057797317.1 Pfam PF23598 LRR_14 Repeat 82 203 3.8e-35 122.0 Leucine-rich repeat region
XP_057797317.1 Pfam PF00560 LRR_1 Repeat 89 109 1.6e-26 87.4 Leucine Rich Repeat
XP_057797317.1 Pfam PF00560 LRR_1 Repeat 135 156 1.6e-26 87.4 Leucine Rich Repeat
XP_057797317.1 Pfam PF13855 LRR_8 Repeat 181 239 3.9e-45 152.2 Leucine rich repeat
XP_057797317.1 Pfam PF13855 LRR_8 Repeat 231 285 3.9e-45 152.2 Leucine rich repeat
XP_057797317.1 Pfam PF00560 LRR_1 Repeat 296 314 1.6e-26 87.4 Leucine Rich Repeat
XP_057797317.1 Pfam PF13855 LRR_8 Repeat 426 481 3.9e-45 152.2 Leucine rich repeat
XP_057797317.1 Pfam PF13855 LRR_8 Repeat 520 578 3.9e-45 152.2 Leucine rich repeat
XP_057797317.1 Pfam PF00560 LRR_1 Repeat 543 562 1.6e-26 87.4 Leucine Rich Repeat
XP_057797318.1 Pfam PF13855 LRR_8 Repeat 66 123 3.9e-45 152.2 Leucine rich repeat
XP_057797318.1 Pfam PF23598 LRR_14 Repeat 82 203 3.8e-35 122.0 Leucine-rich repeat region
XP_057797318.1 Pfam PF00560 LRR_1 Repeat 89 109 1.6e-26 87.4 Leucine Rich Repeat
XP_057797318.1 Pfam PF00560 LRR_1 Repeat 135 156 1.6e-26 87.4 Leucine Rich Repeat
XP_057797318.1 Pfam PF13855 LRR_8 Repeat 181 239 3.9e-45 152.2 Leucine rich repeat
XP_057797318.1 Pfam PF13855 LRR_8 Repeat 231 285 3.9e-45 152.2 Leucine rich repeat
XP_057797318.1 Pfam PF00560 LRR_1 Repeat 296 314 1.6e-26 87.4 Leucine Rich Repeat
XP_057797318.1 Pfam PF13855 LRR_8 Repeat 426 481 3.9e-45 152.2 Leucine rich repeat
XP_057797318.1 Pfam PF13855 LRR_8 Repeat 520 578 3.9e-45 152.2 Leucine rich repeat
XP_057797318.1 Pfam PF00560 LRR_1 Repeat 543 562 1.6e-26 87.4 Leucine Rich Repeat
XP_057797319.1 Pfam PF13855 LRR_8 Repeat 66 123 3.9e-45 152.2 Leucine rich repeat
XP_057797319.1 Pfam PF23598 LRR_14 Repeat 82 203 3.8e-35 122.0 Leucine-rich repeat region
XP_057797319.1 Pfam PF00560 LRR_1 Repeat 89 109 1.6e-26 87.4 Leucine Rich Repeat
XP_057797319.1 Pfam PF00560 LRR_1 Repeat 135 156 1.6e-26 87.4 Leucine Rich Repeat
XP_057797319.1 Pfam PF13855 LRR_8 Repeat 181 239 3.9e-45 152.2 Leucine rich repeat
XP_057797319.1 Pfam PF13855 LRR_8 Repeat 231 285 3.9e-45 152.2 Leucine rich repeat
XP_057797319.1 Pfam PF00560 LRR_1 Repeat 296 314 1.6e-26 87.4 Leucine Rich Repeat
XP_057797319.1 Pfam PF13855 LRR_8 Repeat 426 481 3.9e-45 152.2 Leucine rich repeat
XP_057797319.1 Pfam PF13855 LRR_8 Repeat 520 578 3.9e-45 152.2 Leucine rich repeat
XP_057797319.1 Pfam PF00560 LRR_1 Repeat 543 562 1.6e-26 87.4 Leucine Rich Repeat
XP_057797320.1 Pfam PF13855 LRR_8 Repeat 66 123 2.4e-41 140.0 Leucine rich repeat
XP_057797320.1 Pfam PF23598 LRR_14 Repeat 82 184 1.3e-33 117.0 Leucine-rich repeat region
XP_057797320.1 Pfam PF00560 LRR_1 Repeat 89 109 1.7e-24 81.3 Leucine Rich Repeat
XP_057797320.1 Pfam PF00560 LRR_1 Repeat 135 156 1.7e-24 81.3 Leucine Rich Repeat
XP_057797320.1 Pfam PF13855 LRR_8 Repeat 206 260 2.4e-41 140.0 Leucine rich repeat
XP_057797320.1 Pfam PF00560 LRR_1 Repeat 271 289 1.7e-24 81.3 Leucine Rich Repeat
XP_057797320.1 Pfam PF13855 LRR_8 Repeat 401 456 2.4e-41 140.0 Leucine rich repeat
XP_057797320.1 Pfam PF13855 LRR_8 Repeat 495 553 2.4e-41 140.0 Leucine rich repeat
XP_057797320.1 Pfam PF00560 LRR_1 Repeat 518 537 1.7e-24 81.3 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XR_009097619.1
TGTGAATCTTCAATCTCCATTTTCTTACAAAGAACAGAGTTTTGCTGTCAAATACACTTTCTTCATTTCGTCTCATTTAACTGATTCGATATGGAACTCCGAAGAGATCGTAAATCCGTAATCAATCGAGCCGCCATGGATCGAGCTGCCATGGACCGAGTTCTGAAAGCTGCGCGTTCTTCCGGTTCGCTCAACCTCTCAAACCGCTCTCTCAAAGAAGTACCGGATGAGGTTTACAAAATTTTGGATGCGGTCGGTGG...
XM_057941336.1
GAATCTTCAATCTCCATTTTCTTACAAAGAACAGAGTTTTGCTGTCAAATACACTTTCTTCATTTCGTCTCATTTAACTGATTCGATATGGAACTCCGAAGAGATCGTAAATCCGTAATCAATCGAGCCGCCATGGATCGAGCTGCCATGGACCGAGTTCTGAAAGCTGCGCGTTCTTCCGGTTCGCTCAACCTCTCAAACCGCTCTCTCAAAGAAGTACCGGATGAGGTTTACAAAATTTTGGATGCGGTCGGTGGAGA...

CDS

4 records

下载 CDS FASTA
LOC131013275
ATGGAACTCCGAAGAGATCGTAAATCCGTAATCAATCGAGCCGCCATGGATCGAGCTGCCATGGACCGAGTTCTGAAAGCTGCGCGTTCTTCCGGTTCGCTCAACCTCTCAAACCGCTCTCTCAAAGAAGTACCGGATGAGGTTTACAAAATTTTGGATGCGGTCGGTGGAGATGAGAAGTGGTGGGAGACTGTGGAGCTGCAGAAGCTTATTCTAGCTCATAATGATATTGAATTGCTGAAGGAAGATTTGAGAAATTT...
LOC131013275
ATGGAACTCCGAAGAGATCGTAAATCCGTAATCAATCGAGCCGCCATGGATCGAGCTGCCATGGACCGAGTTCTGAAAGCTGCGCGTTCTTCCGGTTCGCTCAACCTCTCAAACCGCTCTCTCAAAGAAGTACCGGATGAGGTTTACAAAATTTTGGATGCGGTCGGTGGAGATGAGAAGTGGTGGGAGACTGTGGAGCTGCAGAAGCTTATTCTAGCTCATAATGATATTGAATTGCTGAAGGAAGATTTGAGAAATTT...

Protein

4 records

下载 Protein FASTA
XP_057797317.1
MELRRDRKSVINRAAMDRAAMDRVLKAARSSGSLNLSNRSLKEVPDEVYKILDAVGGDEKWWETVELQKLILAHNDIELLKEDLRNLTSLVVLNLSHNKLTHLPAAIGELQMLKSLDVTSNSIMEIPEEIGSAASLVKFDCSNNRLSSLPSSLGHCTNLSELKASNNIISSLPEELANCSKLTKLDVEGNKLVELSHKLIASCPMLMELNASKNLLTSLPESIGCLARVIRLDLHQNRISSIPSSIKGCSSLIELYLGNN...
XP_057797318.1
MELRRDRKSVINRAAMDRAAMDRVLKAARSSGSLNLSNRSLKEVPDEVYKILDAVGGDEKWWETVELQKLILAHNDIELLKEDLRNLTSLVVLNLSHNKLTHLPAAIGELQMLKSLDVTSNSIMEIPEEIGSAASLVKFDCSNNRLSSLPSSLGHCTNLSELKASNNIISSLPEELANCSKLTKLDVEGNKLVELSHKLIASCPMLMELNASKNLLTSLPESIGCLARVIRLDLHQNRISSIPSSIKGCSSLIELYLGNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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