当前解析结果
SmilChr02G001653| 统一新 Gene ID | SmilChr02G001653 |
|---|---|
| 名称 | SmilChr02G001653 |
| 描述 | pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30686091 - 30688459 / - |
| NCBI Gene ID | LOC131013299 |
|---|---|
| GeneID | 131013299 |
| locus_tag | - |
| NCBI Name | LOC131013299 |
| 原始查询 | LOC131013299 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At4g21705%2C mitochondrial-like |
| Arabidopsis | AT4G21705 (AT4G21705)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828258] identity=44.8; qcov=0.901; evalue=1.3e-148; confidence=medium |
| Rice | Os07g0598500- identity=46.5; qcov=0.798; evalue=1.65e-144; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013299 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057797352.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057797352.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797352.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797352.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797352.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30686435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B72 |
Chr2:30686449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:30686622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr2:30686624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:30686647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B69,C74 |
Chr2:30686710 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B14,B55 |
Chr2:30686713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:30686850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:30686992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:30687012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B53 |
Chr2:30687173 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B128 |
Chr2:30687173 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B128 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797352.1PF01535
PPR 167-195 aa
PF13812
PPR_3 189-248 aa
PF13041
PPR_2 200-245 aa
PF01535
PPR 201-231 aa
PF01535
PPR 308-328 aa
PF01535
PPR 343-365 aa
PF01535
PPR 379-405 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797352.1 |
Pfam | PF01535 |
PPR | Repeat | 167 | 195 | 6e-26 | 89.6 | PPR repeat |
XP_057797352.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 189 | 248 | 3.9e-14 | 53.2 | Pentatricopeptide repeat domain |
XP_057797352.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 200 | 245 | 2.1e-27 | 95.7 | PPR repeat family |
XP_057797352.1 |
Pfam | PF01535 |
PPR | Repeat | 201 | 231 | 6e-26 | 89.6 | PPR repeat |
XP_057797352.1 |
Pfam | PF01535 |
PPR | Repeat | 308 | 328 | 6e-26 | 89.6 | PPR repeat |
XP_057797352.1 |
Pfam | PF01535 |
PPR | Repeat | 343 | 365 | 6e-26 | 89.6 | PPR repeat |
XP_057797352.1 |
Pfam | PF01535 |
PPR | Repeat | 379 | 405 | 6e-26 | 89.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。