Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001706`

染色体: Chr02 坐标: 31383220-31389483 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001706`
名称	SmilChr02G001706
描述	protein SPA1-RELATED 4
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	31383220 - 31389483 / `+`

ID 对照

NCBI Gene ID	`LOC131013333`
GeneID	`131013333`
locus_tag	`-`
NCBI Name	`LOC131013333`
原始查询	`LOC131013333`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein SPA1-RELATED 4
产物	protein SPA1-RELATED 4
Arabidopsis	`AT3G15354` (SPA3) SPA1-related 3 [Source:NCBI gene (formerly Entrezgene);Acc:820767] identity=54.9; qcov=0.971; evalue=0; confidence=high
Rice	`Os01g0725800` (OsWD40-24) - identity=61.2; qcov=0.659; evalue=2.78e-179; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0009640 (photomorphogenesis)
KEGG	smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131013333

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057797388.1`
2	Cytosol	细胞质基质	0.80000	`XP_057797389.1`
3	Cytoplasm	细胞质	0.60000	`XP_057797389.1`
4	Chromosome	染色体	0.00000	`XP_057797388.1`
5	Centromere	着丝粒	0.00000	`XP_057797388.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:31384113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B94,C24,C49
`Chr2:31384165`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	B6
`Chr2:31384165`	`TTC`	`T`	2bp_deletion	CDS_variant	1	B6
`Chr2:31384192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,A9,D1
`Chr2:31384347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr2:31384435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B19,B28,C15,C79,D3
`Chr2:31384530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:31384570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,B87,C33
`Chr2:31384609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:31384681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:31384801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,B87,C33
`Chr2:31384823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797388.1

899 aa

450

899

WD40

PF00400 WD40 589-616 aa PF00400 WD40 677-710 aa PF00400 WD40 759-794 aa

XP_057797389.1

735 aa

368

735

WD40

PF00400 WD40 589-616 aa PF00400 WD40 677-710 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797388.1`	Pfam	`PF00400`	WD40	Repeat	589	616	1.7e-22	79.6	WD domain, G-beta repeat
`XP_057797388.1`	Pfam	`PF00400`	WD40	Repeat	677	710	1.7e-22	79.6	WD domain, G-beta repeat
`XP_057797388.1`	Pfam	`PF00400`	WD40	Repeat	759	794	1.7e-22	79.6	WD domain, G-beta repeat
`XP_057797389.1`	Pfam	`PF00400`	WD40	Repeat	589	616	7.6e-13	49.1	WD domain, G-beta repeat
`XP_057797389.1`	Pfam	`PF00400`	WD40	Repeat	677	710	7.6e-13	49.1	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941406.1
TGAGACACGTCGCCAGTTTACATGAATGGAAGCGGGAATTGTAGATAATACAAGGGCAGGTCCTTTTAGGGTTTGTAAATACGTCAAGTATAGACGAAATGATCTCACAAATCTGCATAAAAAGGATTTTTTTACACATCTCGCGTTTATTGCAATCACAAATCTGCATAAAAAGGGATTTTTTACACATCTCGCGTTTATTGCAATTTACGATGTGTAATGTATTCGTCACATTTGAGGTCTGTCTGTATGCTTTGAAC...

XM_057941405.1
CGTCGCCAGTTTACATGAATGGAAGCGGGAATTGTAGATAATACAAGGGCAGGTCCTTTTAGGGTTTGTAAATACGTCAAGTATAGACGAAATGATCTCACAAATCTGCATAAAAAGGATTTTTTTACACATCTCGCGTTTATTGCAATCACAAATCTGCATAAAAAGGGATTTTTTACACATCTCGCGTTTATTGCAATTTACGATGTGTAATGTATTCGTCACATTTGAGGTCTGTCTGTATGCTTTGAACATTTAGT...

CDS

2 records

下载 CDS FASTA

LOC131013333
ATGTTTGTGTTTGTATCCTGGGATTCATGTAAGTATACTAGTAGTGAGAGGTGGATAGTTATGGAGGGCTCATCCGAGTCTGGTTGGGAGAGGTCTGATAGTTCTAGGGGTTTGAATTCTTCATTCTTGGTCAGAAATTCAAGAATTTTGAGGGCAGGTGCTGTCAGATTTTCAGGAGATAATAATAGCAATGATTCTGTGAGGAAAGGGAGGCCTTGGACTCATGTCAATAGCCATAGAGCTCTCCTCCCCGGGGTTGA...

Protein

2 records

下载 Protein FASTA

XP_057797388.1
MFVFVSWDSCKYTSSERWIVMEGSSESGWERSDSSRGLNSSFLVRNSRILRAGAVRFSGDNNSNDSVRKGRPWTHVNSHRALLPGVEGADGGGGAVARPTECNDVSLRKWLDNPDRTVDALECLHIFSQIVDVVNLAHSQGIVVHNVRPSCFVMSSYNRVSFIESASCSDSGSDSPEYGSNSQMAQFKGSPSLVPPESQHSRSQSGAQDAHLARNPASQINSESSCLQSSSGQAVHASEGAANERTGDKKQSFPMKQILL...

XP_057797389.1
MFVFVSWDSCKYTSSERWIVMEGSSESGWERSDSSRGLNSSFLVRNSRILRAGAVRFSGDNNSNDSVRKGRPWTHVNSHRALLPGVEGADGGGGAVARPTECNDVSLRKWLDNPDRTVDALECLHIFSQIVDVVNLAHSQGIVVHNVRPSCFVMSSYNRVSFIESASCSDSGSDSPEYGSNSQMAQFKGSPSLVPPESQHSRSQSGAQDAHLARNPASQINSESSCLQSSSGQAVHASEGAANERTGDKKQSFPMKQILL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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