当前解析结果
SmilChr01G005923| 统一新 Gene ID | SmilChr01G005923 |
|---|---|
| 名称 | SmilChr01G005923 |
| 描述 | probable E3 ubiquitin-protein ligase ARI8 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75042558 - 75043921 / + |
| NCBI Gene ID | LOC131013381 |
|---|---|
| GeneID | 131013381 |
| locus_tag | - |
| NCBI Name | LOC131013381 |
| 原始查询 | LOC131013381 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase ARI8 |
| 产物 | probable E3 ubiquitin-protein ligase ARI8 |
| Arabidopsis | AT1G65430 (ARI8)IBR domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842854] identity=52.7; qcov=0.859; evalue=2.71e-114; confidence=high |
| Rice | Os04g0492100- identity=54.4; qcov=0.827; evalue=9.01e-114; confidence=high |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF01485 (IBR); PF19422 (Ariadne); PF22191 (IBR_1); PF22605 (IBR_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013381 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797433.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057797433.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057797433.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057797433.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057797433.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75042580 |
AC |
A |
1bp_deletion | frameshift_variant | 12 | B122,B38,B39,B47,B7,B77,C28,C55,C70,C76,D11,D8 |
Chr1:75042583 |
C |
CA |
1bp_insertion | frameshift_variant | 11 | B122,B38,B39,B47,B7,B77,C28,C55,C70,C76,D11 |
Chr1:75042610 |
C |
CT |
1bp_insertion | frameshift_variant | 8 | B100,B20,C57,C62,C63,C78,C8,C86 |
Chr1:75042626 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | B21,C61 |
Chr1:75042626 |
CA |
C |
1bp_deletion | CDS_variant | 2 | B21,C61 |
Chr1:75042731 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr1:75042736 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | D3 |
Chr1:75042736 |
G |
GA |
1bp_insertion | CDS_variant | 1 | D3 |
Chr1:75042983 |
C |
CCG |
2bp_insertion | frameshift_variant | 4 | B55,B62,B65,C76 |
Chr1:75042983 |
C |
CCG |
2bp_insertion | CDS_variant | 4 | B55,B62,B65,C76 |
Chr1:75042984 |
ATT |
A |
2bp_deletion | frameshift_variant | 3 | B55,B65,C76 |
Chr1:75042984 |
ATT |
A |
2bp_deletion | CDS_variant | 3 | B55,B65,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797433.1PF01485
IBR 30-91 aa
PF22605
IBR_2 111-149 aa
PF22191
IBR_1 115-150 aa
PF19422
Ariadne 183-326 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797433.1 |
Pfam | PF01485 |
IBR | Domain | 30 | 91 | 2.8e-17 | 63.2 | IBR domain, a half RING-finger domain |
XP_057797433.1 |
Pfam | PF22605 |
IBR_2 | Domain | 111 | 149 | 3.2e-08 | 34.3 | IBR domain |
XP_057797433.1 |
Pfam | PF22191 |
IBR_1 | Domain | 115 | 150 | 1.8e-10 | 41.3 | IBR domain |
XP_057797433.1 |
Pfam | PF19422 |
Ariadne | Domain | 183 | 326 | 2.4e-11 | 44.6 | Ariadne domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。