Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002263`

染色体: Chr02 坐标: 40081593-40083658 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002263`
名称	SmilChr02G002263
描述	uncharacterized SmilChr02G002263
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40081593 - 40083658 / `-`

ID 对照

NCBI Gene ID	`LOC131013386`
GeneID	`131013386`
locus_tag	`-`
NCBI Name	`LOC131013386`
原始查询	`LOC131013386`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	1,3-beta-glucan synthase component (DUF1218) [Source:NCBI gene (formerly Entrezgene);Acc:842398]; symbol=AT1G61065; hit=AT1G61065; species=arabidopsis; confidence=high
产物	1,3-beta-glucan synthase component (DUF1218) [Source:NCBI gene (formerly Entrezgene);Acc:842398]; symbol=AT1G61065; hit=AT1G61065; species=arabidopsis; confidence=high
Arabidopsis	`AT1G61065` (AT1G61065) 1,3-beta-glucan synthase component (DUF1218) [Source:NCBI gene (formerly Entrezgene);Acc:842398] identity=65.9; qcov=1; evalue=1.31e-71; confidence=high
Rice	`Os07g0462200` - identity=58.7; qcov=0.933; evalue=9.91e-57; confidence=high
GO	-
KEGG	-
Pfam	PF06749 (DUF1218)
InterPro	-
eggNOG	-
NR	GeneID:131013386

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797435.1`
2	Vacuole	液泡	0.40000	`XP_057797435.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057797435.1`
4	Nucleus	细胞核	0.00000	`XP_057797437.1`
5	Chromosome	染色体	0.00000	`XP_057797437.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40081911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,B84,C33,C86
`Chr2:40082028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B2,B30,B7,C8
`Chr2:40082211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B29,B84,C33,D1
`Chr2:40083173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:40083211`	`CAA`	`C`	2bp_deletion	frameshift_variant	1	B57
`Chr2:40083211`	`CAA`	`C`	2bp_deletion	CDS_variant	1	B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797435.1

204 aa

102

204

DUF1218

PF06749 DUF1218 56-99 aa PF06749 DUF1218 123-175 aa

XP_057797436.1

204 aa

102

204

DUF1218

PF06749 DUF1218 56-99 aa PF06749 DUF1218 123-175 aa

XP_057797437.1

179 aa

179

DUF1218

PF06749 DUF1218 56-150 aa

XP_057797438.1

179 aa

179

DUF1218

PF06749 DUF1218 56-150 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797435.1`	Pfam	`PF06749`	DUF1218	Family	56	99	4.8e-24	85.4	Protein of unknown function (DUF1218)
`XP_057797435.1`	Pfam	`PF06749`	DUF1218	Family	123	175	4.8e-24	85.4	Protein of unknown function (DUF1218)
`XP_057797436.1`	Pfam	`PF06749`	DUF1218	Family	56	99	4.8e-24	85.4	Protein of unknown function (DUF1218)
`XP_057797436.1`	Pfam	`PF06749`	DUF1218	Family	123	175	4.8e-24	85.4	Protein of unknown function (DUF1218)
`XP_057797437.1`	Pfam	`PF06749`	DUF1218	Family	56	150	1e-29	103.5	Protein of unknown function (DUF1218)
`XP_057797438.1`	Pfam	`PF06749`	DUF1218	Family	56	150	1e-29	103.5	Protein of unknown function (DUF1218)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057941455.1
AGTTTGACGCTAACAAGAGAAATTCCTTTATAGTTTATATATATATATATTAATATTATGTAGAAGAAATTCCTATATATCATTTCACTTGTTTAGTTTTCTTGTGTGCTTCCCTTAGAGAGAGAGAGAGAGAGAGATTCTTTTGGTGGATAAAGGTCCATTTTCATGCTCAGTATTGTTGATATATACTATAATTAAAGCCTTCATCTGCGTAACAATGGCGTCCAAATTTTTGTTGCTCACAGTTTTTGTCTTAGATT...

XM_057941453.1
TTATGTAGAAGAAATTCCTATATATCATTTCACTTGTTTAGTTTTCTTGTGTGCTTCCCTTAGAGAGAGAGAGAGAGAGAGATTCTTTTGGTGGATAAAGGTCCATTTTCATGCTCAGTATTGTTGATATATACTATAATTAAAGCCTTCATCTGCGTAACAATGGCGTCCAAATTTTTGTTGCTCACAGTTTTTGTCTTAGATTTGATTGCTTTTTCGCTTGCTGTTGCCGCCGAGCACCGCAGATCTTCTGTGAGCGT...

CDS

4 records

下载 CDS FASTA

LOC131013386
ATGGCGTCCAAATTTTTGTTGCTCACAGTTTTTGTCTTAGATTTGATTGCTTTTTCGCTTGCTGTTGCCGCCGAGCACCGCAGATCTTCTGTGAGCGTTGCAACTGAGGCGAACACGAAGTATTGTGCTTATGATTCGGACATAGCAACGGGGCTAGGCGTGGGCTCATTCTTGTTCCTCATGGTTAGCCAACTAATGATCATGGGTGCAAGTAAATGCTTGTGCTGTGGGAGAGCTCTCCGACCCGGTTGTTCTAGGGT...

Protein

4 records

下载 Protein FASTA

XP_057797435.1
MASKFLLLTVFVLDLIAFSLAVAAEHRRSSVSVATEANTKYCAYDSDIATGLGVGSFLFLMVSQLMIMGASKCLCCGRALRPGCSRVWAIVLFIFCWYTSDLLFNSFNLLQVFIKSILLHIRLAFFIAELCLLAGSVRNAYHTKYRTYWSSNPPSCETLRKGVFGAGAAFIVFTGILSQLFYVTYSKTDDGSLPLRQDTGIRMG

XP_057797436.1
MASKFLLLTVFVLDLIAFSLAVAAEHRRSSVSVATEANTKYCAYDSDIATGLGVGSFLFLMVSQLMIMGASKCLCCGRALRPGCSRVWAIVLFIFCWYTSDLLFNSFNLLQVFIKSILLHIRLAFFIAELCLLAGSVRNAYHTKYRTYWSSNPPSCETLRKGVFGAGAAFIVFTGILSQLFYVTYSKTDDGSLPLRQDTGIRMG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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