当前解析结果
SmilChr02G002262| 统一新 Gene ID | SmilChr02G002262 |
|---|---|
| 名称 | SmilChr02G002262 |
| 描述 | actin-related protein 2/3 complex subunit 5A |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40078649 - 40081433 / + |
| NCBI Gene ID | LOC131013387 |
|---|---|
| GeneID | 131013387 |
| locus_tag | - |
| NCBI Name | LOC131013387 |
| 原始查询 | LOC131013387 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | actin-related protein 2/3 complex subunit 5A |
| 产物 | actin-related protein 2/3 complex subunit 5A |
| Arabidopsis | AT4G01710 (CRK)ARP2/3 complex 16 kDa subunit (p16-Arc) [Source:NCBI gene (formerly Entrezgene);Acc:828087] identity=87.1; qcov=1; evalue=7.13e-85; confidence=high |
| Rice | Os11g0557900- identity=81.1; qcov=1; evalue=3.91e-77; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005885 (Arp2/3 protein complex); GO:0015629 (actin cytoskeleton); GO:0030833 (regulation of actin filament polymerization); GO:0034314 (Arp2/3 complex-mediated actin nucleation); GO:0051015 (actin filament binding) |
| KEGG | smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04699 (P16-Arc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013387 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797439.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057797439.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797439.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797439.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797439.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797439.1PF04699
P16-Arc 10-128 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797439.1 |
Pfam | PF04699 |
P16-Arc | Domain | 10 | 128 | 1.6e-21 | 78.0 | ARP2/3 complex 16 kDa subunit (p16-Arc) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。