Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002282`

染色体: Chr02 坐标: 40299572-40302326 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002282`
名称	SmilChr02G002282
描述	pentatricopeptide repeat-containing protein At3g49740-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40299572 - 40302326 / `-`

ID 对照

NCBI Gene ID	`LOC131013396`
GeneID	`131013396`
locus_tag	`-`
NCBI Name	`LOC131013396`
原始查询	`LOC131013396`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g49740-like
产物	pentatricopeptide repeat-containing protein At3g49740-like
Arabidopsis	`AT3G49740` (AT3G49740) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824136] identity=51.6; qcov=1; evalue=0; confidence=high
Rice	`Os10g0558600` (PPR13) - identity=35.9; qcov=1; evalue=5.81e-117; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131013396

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057797447.1`
2	Chloroplast	叶绿体	0.20000	`XP_057797447.1`
3	Nucleus	细胞核	0.00000	`XP_057797447.1`
4	Chromosome	染色体	0.00000	`XP_057797447.1`
5	Centromere	着丝粒	0.00000	`XP_057797447.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40300217`	`G`	`A`	EMS_canonical_SNV	stop_gained	90	A11,A13,A14,A15,A20,A23,A3,A4,A6,A8,B1,B105,B106,B108,B11,B110,B121,B129,B133,B137,B139,B140,B15,B16,B18,B19,B22,B23,B26,B28,B31,B33,B35,B36,B45,B47,B50,B52,B55,B57,B59,B6,B60,B66,B67,B72,B74,B75,B77,B78,B79,B8,B81,B86,B87,B88,B9,B99,C10,C12,C16,C19,C22,C23,C28,C32,C35,C36,C37,C39,C41,C43,C46,C5,C51,C57,C64,C67,C68,C7,C71,C72,C75,C77,C82,C84,D11,D2,D3,D7
`Chr2:40300221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B68
`Chr2:40300270`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C2,C32,C68
`Chr2:40300270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:40300285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,B19,C13
`Chr2:40300298`	`AT`	`A`	1bp_deletion	frameshift_variant	3	A9,C7,C71
`Chr2:40300298`	`AT`	`A`	1bp_deletion	CDS_variant	3	A9,C7,C71
`Chr2:40300302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B76,C62
`Chr2:40300358`	`T`	`TA`	1bp_insertion	frameshift_variant	6	A16,A7,B80,B89,C30,C42
`Chr2:40300371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B76,C62,D8
`Chr2:40300384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B66
`Chr2:40300390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797447.1

591 aa

296

591

PPR

PPR_3

PPR

PPR_2

PPR

PPR_2

PPR

E_motif

PF01535 PPR 114-143 aa PF13812 PPR_3 114-158 aa PF01535 PPR 184-210 aa PF13041 PPR_2 209-254 aa PF01535 PPR 212-242 aa PF01535 PPR 282-309 aa PF01535 PPR 310-339 aa PF01535 PPR 383-408 aa PF13041 PPR_2 408-457 aa PF01535 PPR 411-438 aa PF01535 PPR 448-474 aa PF20431 E_motif 528-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	114	143	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF13812`	PPR_3	Repeat	114	158	2.4e-19	69.9	Pentatricopeptide repeat domain
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	184	210	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF13041`	PPR_2	Repeat	209	254	9.1e-61	202.5	PPR repeat family
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	212	242	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	282	309	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	310	339	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	383	408	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF13041`	PPR_2	Repeat	408	457	9.1e-61	202.5	PPR repeat family
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	411	438	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF01535`	PPR	Repeat	448	474	1.3e-48	160.6	PPR repeat
`XP_057797447.1`	Pfam	`PF20431`	E_motif	Repeat	528	588	2e-11	44.7	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941464.1
GTCAAACTCAATTGCTTTCTCAAGAACCTCGTCCATGCCCACAGATTCGCCGACGCCCTCCATCTCTTCCAACAAATCCATTCACTCCGCCACCTCAAACCCGACCACTACACTCTCTCCACCGCCCTCACCGCCTGCGCCAACTCCCGCCAAATCAGAGTGGGCGTTCAACTCCACGCCCTCTGCGTTAAATCCGCCCTTCAAAGTTTTTCCCACGTTGCCAATGCCCTGCTTTCCTTCTACTCCAAGACGCGGGACTT...

CDS

1 records

下载 CDS FASTA

LOC131013396
ATGGTGTTCGACCAAATGCCTGAAAGAAACGTGGCAGTATGGAATGCTATGATCACGGGGTGTCCTGAGAATGGACATCAGGGGATTGCGTTGCATTTTTTTCGGAGAATGCGGATCCTTGATGTGCAAGCAGATAACTATGCGTTTGCTTGTGTTTTGAGCTTATGTTCATCTGGGAAGCTTGATTTTGGGAGGCAACTCCATTGCTTGGTTTTTAAGAATGGATTTTTGAGGCAGGGTTCCGTTGTTAATTCTTTGGT...

Protein

1 records

下载 Protein FASTA

XP_057797447.1
MVFDQMPERNVAVWNAMITGCPENGHQGIALHFFRRMRILDVQADNYAFACVLSLCSSGKLDFGRQLHCLVFKNGFLRQGSVVNSLVTMYFNYESAGDAYGAFEEIGRQVGDEITYNAVIAGLVNVERDQEALLMFKDIQTLGLKPTELTFVSVMGACFYSKIATQVHGQAIKMSFEDSTKVNNAVINMYSNCGELDAACLVFRTLEEKDIVSWNAIIASYAQESLSEDVISTYLQMQRNGIEPDEFTIGSLLASLDLIR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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