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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002277

染色体: Chr02 坐标: 40253801-40258423 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002277
名称SmilChr02G002277
描述pentatricopeptide repeat-containing protein At1g77170, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向40253801 - 40258423 / -

ID 对照

NCBI Gene IDLOC131013397
GeneID131013397
locus_tag-
NCBI NameLOC131013397
原始查询LOC131013397

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g77170, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g77170%2C mitochondrial-like
ArabidopsisAT1G77170 (AT1G77170)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844054]
identity=52.1; qcov=0.963; evalue=1.57e-172; confidence=high
RiceOs10g0400250
-
identity=36.6; qcov=0.894; evalue=6.09e-90; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131013397

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057797448.1
2 Nucleus 细胞核 0.00000 XP_057797448.1
3 Chromosome 染色体 0.00000 XP_057797448.1
4 Centromere 着丝粒 0.00000 XP_057797448.1
5 Chromatin 染色质 0.00000 XP_057797448.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:40256940 C T EMS_canonical_SNV CDS_variant 1 B69
Chr2:40257301 C T EMS_canonical_SNV CDS_variant 4 B123,B36,B41,B51
Chr2:40257594 C T EMS_canonical_SNV CDS_variant 1 B1
Chr2:40257700 C T EMS_canonical_SNV CDS_variant 3 B31,B50,C86
Chr2:40257790 G A EMS_canonical_SNV CDS_variant 3 A9,C7,C71
Chr2:40257803 G A EMS_canonical_SNV CDS_variant 4 B130,B37,B54,C81
Chr2:40257804 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797448.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
XP_057797449.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
XP_057797450.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
XP_057797451.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
XP_057797452.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
XP_057797453.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
XP_057797454.1
462 aa
N
1
231
462
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR
E_motif
C
PF01535 PPR 154-173 aa PF01535 PPR 183-212 aa PF12854 PPR_1 250-280 aa PF13041 PPR_2 251-285 aa PF01535 PPR 255-284 aa PF13041 PPR_2 282-330 aa PF13812 PPR_3 283-330 aa PF01535 PPR 286-315 aa PF01535 PPR 320-347 aa PF01535 PPR 358-382 aa PF20431 E_motif 400-451 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797448.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797448.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797448.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797448.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797448.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797448.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797448.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797448.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797448.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797448.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797448.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif
XP_057797449.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797449.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797449.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797449.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797449.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797449.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797449.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797449.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797449.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797449.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797449.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif
XP_057797450.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797450.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797450.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797450.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797450.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797450.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797450.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797450.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797450.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797450.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797450.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif
XP_057797451.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797451.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797451.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797451.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797451.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797451.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797451.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797451.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797451.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797451.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797451.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif
XP_057797452.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797452.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797452.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797452.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797452.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797452.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797452.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797452.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797452.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797452.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797452.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif
XP_057797453.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797453.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797453.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797453.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797453.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797453.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797453.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797453.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797453.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797453.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797453.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif
XP_057797454.1 Pfam PF01535 PPR Repeat 154 173 4.9e-37 124.3 PPR repeat
XP_057797454.1 Pfam PF01535 PPR Repeat 183 212 4.9e-37 124.3 PPR repeat
XP_057797454.1 Pfam PF12854 PPR_1 Repeat 250 280 2.8e-21 75.7 PPR repeat
XP_057797454.1 Pfam PF13041 PPR_2 Repeat 251 285 8.5e-42 141.8 PPR repeat family
XP_057797454.1 Pfam PF01535 PPR Repeat 255 284 4.9e-37 124.3 PPR repeat
XP_057797454.1 Pfam PF13041 PPR_2 Repeat 282 330 8.5e-42 141.8 PPR repeat family
XP_057797454.1 Pfam PF13812 PPR_3 Repeat 283 330 2.4e-12 47.5 Pentatricopeptide repeat domain
XP_057797454.1 Pfam PF01535 PPR Repeat 286 315 4.9e-37 124.3 PPR repeat
XP_057797454.1 Pfam PF01535 PPR Repeat 320 347 4.9e-37 124.3 PPR repeat
XP_057797454.1 Pfam PF01535 PPR Repeat 358 382 4.9e-37 124.3 PPR repeat
XP_057797454.1 Pfam PF20431 E_motif Repeat 400 451 6.9e-16 59.0 E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XR_009097665.1
AGATTTTTGTCCTTAACAATTGGGGTTCAGGGTTTAGGGGAAAGATCAGTAGTTGTCAATTTTCATATATCGAATCACCGTCGTCGACTGTATCGCCGGAGACGCCATAACCGACGACTCTCCGTCGGCTACCAGGCTGTTCCTGACCCTCTACTTTAGGAGCCGACCGAGTTGAGGATAACATGTATGCAAGTGTTCGGAAAGTCAAGATAGACAGCATTAAAGTTTAGTAGTTTACATACAGAAGAAAAGTGAGCTGG...
XM_057941469.1
AAGAAGATTTTTGTCCTTAACAATTGGGGTTCAGGGTTTAGGGGAAAGATCAGTAGTTGTCAATTTTCATATATCGAATCACCGTCGTCGACTGTATCGCCGGAGACGCCATAACCGACGACTCTCCGTCGGCTACCAGGTACATCTTTACCCATCCTTTCCTGGTACTCATCGTTCCTCCGGCCTTCTCCTTACGTCTATTGTTCATGAATTCGAACCTTTCCCCCATTTATATAGTGAGACAGGATGTTCAATGAATT...

CDS

7 records

下载 CDS FASTA
LOC131013397
ATGCATAAGCATAAATTACTCTCCAGAATCCAACTTTCCAGTTTCCGCATTTTCAATCGCAATGTGGCCAGTGTTTCTGCATTTGGCGATATTTCTAATGTGCACACATCTCACCAACAAATCCTATCCAATCCCAAAGAATTAGCTATTCTAGTATCGACGTGCTCGAATCTGAAGCAACTGCGTCAAGTTTTTGCCCAAATAATACAAACCCGTTTCCTAGAACTGTATCCAGCTTCCTTTCATTACAATAATATCAG...
LOC131013397
ATGCATAAGCATAAATTACTCTCCAGAATCCAACTTTCCAGTTTCCGCATTTTCAATCGCAATGTGGCCAGTGTTTCTGCATTTGGCGATATTTCTAATGTGCACACATCTCACCAACAAATCCTATCCAATCCCAAAGAATTAGCTATTCTAGTATCGACGTGCTCGAATCTGAAGCAACTGCGTCAAGTTTTTGCCCAAATAATACAAACCCGTTTCCTAGAACTGTATCCAGCTTCCTTTCATTACAATAATATCAG...

Protein

7 records

下载 Protein FASTA
XP_057797448.1
MHKHKLLSRIQLSSFRIFNRNVASVSAFGDISNVHTSHQQILSNPKELAILVSTCSNLKQLRQVFAQIIQTRFLELYPASFHYNNISRTYIRLLSPREASRVYIAMRRAGISPDEFTLPIVLKAASRNLDVVLAGQVHGFAVKYGMENDMYCVSGLISSYSKGGRFEMAQKVFLCSPVRKLGHWNAIIAGLSQGGRGKEALRMFVEMMESGICPDDMTMVGVTSACGSLSDLNLALQLHKFAFQVNRLEKPDVLTMNSVI...
XP_057797449.1
MHKHKLLSRIQLSSFRIFNRNVASVSAFGDISNVHTSHQQILSNPKELAILVSTCSNLKQLRQVFAQIIQTRFLELYPASFHYNNISRTYIRLLSPREASRVYIAMRRAGISPDEFTLPIVLKAASRNLDVVLAGQVHGFAVKYGMENDMYCVSGLISSYSKGGRFEMAQKVFLCSPVRKLGHWNAIIAGLSQGGRGKEALRMFVEMMESGICPDDMTMVGVTSACGSLSDLNLALQLHKFAFQVNRLEKPDVLTMNSVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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