Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002303`

染色体: Chr02 坐标: 40643795-40647680 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002303`
名称	SmilChr02G002303
描述	uncharacterized SmilChr02G002303
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40643795 - 40647680 / `-`

ID 对照

NCBI Gene ID	`LOC131013427`
GeneID	`131013427`
locus_tag	`-`
NCBI Name	`LOC131013427`
原始查询	`LOC131013427`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bromodomain 4 [Source:NCBI gene (formerly Entrezgene);Acc:2745841]; symbol=BRD4; hit=AT1G61215; species=arabidopsis; confidence=medium
产物	bromodomain 4 [Source:NCBI gene (formerly Entrezgene);Acc:2745841]; symbol=BRD4; hit=AT1G61215; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G61215` (BRD4) bromodomain 4 [Source:NCBI gene (formerly Entrezgene);Acc:2745841] identity=36.6; qcov=1.03; evalue=1.92e-49; confidence=medium
Rice	`Os07g0565300` (OJ1773_H01.106) - identity=31; qcov=0.839; evalue=7.52e-26; confidence=low
GO	GO:0005515 (protein binding); GO:0016573 (GO:0016573); GO:0035267 (NuA4 histone acetyltransferase complex)
KEGG	-
Pfam	PF00439 (Bromodomain)
InterPro	-
eggNOG	-
NR	GeneID:131013427

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797476.1`
2	Chromosome	染色体	0.00000	`XP_057797476.1`
3	Centromere	着丝粒	0.00000	`XP_057797476.1`
4	Chromatin	染色质	0.00000	`XP_057797476.1`
5	Telomere	端粒	0.00000	`XP_057797476.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40644151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:40644200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:40644813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:40644854`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B41
`Chr2:40644854`	`GC`	`G`	1bp_deletion	CDS_variant	1	B41
`Chr2:40644916`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C67
`Chr2:40644916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr2:40644928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B24,B72,C8
`Chr2:40644994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B24,B72,C8
`Chr2:40645048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr2:40645067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:40645465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797476.1

468 aa

234

468

Bromodomain

PF00439 Bromodomain 265-344 aa

XP_057797477.1

408 aa

204

408

Bromodomain

PF00439 Bromodomain 205-284 aa

XP_057797478.1

392 aa

196

392

Bromodomain

PF00439 Bromodomain 189-268 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797476.1`	Pfam	`PF00439`	Bromodomain	Domain	265	344	1.1e-10	42.0	Bromodomain
`XP_057797477.1`	Pfam	`PF00439`	Bromodomain	Domain	205	284	1e-10	42.2	Bromodomain
`XP_057797478.1`	Pfam	`PF00439`	Bromodomain	Domain	189	268	1e-10	42.1	Bromodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941493.1
TTCTCATAAAAAAAAGAAAAAAGAAAACAAGAGATTTTCGGCGGCTTAATAAAGTTATGAATAATTGAATACTTCTATATTTACGCCCATACATAGAAATAGAATGTCATCCAAACAAATTCAGCGAGAGATTTGAGGTGTTTTTTTCCACCACCAAATGCTAAATTAAGGGTGTCCCAAAATCCTAGGTTTTGAGAGGTTCCCCAATTTCACGGTTAGAGGATGGGGGCGGAGGCGGCGGCGGTGTGGGGCACGTGGGA...

XM_057941494.1
TAGAAATAGAATGTCATCCAAACAAATTCAGCGAGAGATTTGAGGTGTTTTTTTCCACCACCAAATGCTAAATTAAGGGTGTCCCAAAATCCTAGGTTTTGAGAGGTTCCCCAATTTCACGGTTAGAGGATGGGGGCGGAGGCGGCGGCGGTGTGGGGCACGTGGGAGGATCTTATTTTGGGTGGCGCCGTTGTGAGGCACGGAACGGGCGATTGGAACGTCGTCGCTTCGGAGCTTCGTGCGCGCACCCTTTATCCCTA...

CDS

3 records

下载 CDS FASTA

LOC131013427
ATGGGGGCGGAGGCGGCGGCGGTGTGGGGCACGTGGGAGGATCTTATTTTGGGTGGCGCCGTTGTGAGGCACGGAACGGGCGATTGGAACGTCGTCGCTTCGGAGCTTCGTGCGCGCACCCTTTATCCCTATGCCTTTACTGCTCAGGCTTGTAAAGAAAGGTACGAGGACCTACAAAAATGTTATTCGGGATCCACGGCTTGGTTTGAAGAGCTGAGAAAGCGTCGTATGGCAGAGCTCAAGCGAGAACTGGTTAAATC...

LOC131013427
ATGCCTTTACTGCTCAGGGCTTGGTTTGAAGAGCTGAGAAAGCGTCGTATGGCAGAGCTCAAGCGAGAACTGGTTAAATCTGAAAACTCAATAGGATCTCTTGAGTCAAAGATCAAATCACTGGAGGGGAAGAAACAACGCTCCAAACAAGGTGATTACGGTTTGAGCGAGACCGAATCACCTCTACCCGCATTGGATTCAGAAGCCACAGAGTCAATCAGCAGACAGACATCAAATGGTGAAAACTCTGTTGGCAGCTT...

Protein

3 records

下载 Protein FASTA

XP_057797476.1
MGAEAAAVWGTWEDLILGGAVVRHGTGDWNVVASELRARTLYPYAFTAQACKERYEDLQKCYSGSTAWFEELRKRRMAELKRELVKSENSIGSLESKIKSLEGKKQRSKQGDYGLSETESPLPALDSEATESISRQTSNGENSVGSFTKETSTRASWLCDRQPQAVETETETKPSTSACSEQGKDSSIEKFPEVGYEHGVIIRKKRGQRKRKDCSRAVKERSVGESDNLGSSNSVSTANKETSTNECKRTRIPGSNATRR...

XP_057797477.1
MPLLLRAWFEELRKRRMAELKRELVKSENSIGSLESKIKSLEGKKQRSKQGDYGLSETESPLPALDSEATESISRQTSNGENSVGSFTKETSTRASWLCDRQPQAVETETETKPSTSACSEQGKDSSIEKFPEVGYEHGVIIRKKRGQRKRKDCSRAVKERSVGESDNLGSSNSVSTANKETSTNECKRTRIPGSNATRRESLIEIFESVAQSEPAAVFRHRMDSQKRARYRRVIRQHMDIGTIKSRIIGQSIKSAKELF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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