Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002308`

染色体: Chr02 坐标: 40695364-40701609 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002308`
名称	SmilChr02G002308
描述	E3 ubiquitin-protein ligase JMJ24-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40695364 - 40701609 / `+`

ID 对照

NCBI Gene ID	`LOC131013430`
GeneID	`131013430`
locus_tag	`-`
NCBI Name	`LOC131013430`
原始查询	`LOC131013430`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase JMJ24-like
产物	E3 ubiquitin-protein ligase JMJ24-like
Arabidopsis	`AT1G09060` (AT1G09060) JmjC domain protein JMJ24 [Source:NCBI gene (formerly Entrezgene);Acc:837427] identity=49.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0346700` (JMJ716) - identity=45.9; qcov=0.889; evalue=0; confidence=high
GO	GO:0000118 (histone deacetylase complex); GO:0000785 (chromatin); GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0031490 (chromatin DNA binding); GO:0032454 (histone H3K9 demethylase activity); GO:0033169 (GO:0033169)
KEGG	-
Pfam	PF10497 (zf-4CXXC_R1)
InterPro	-
eggNOG	-
NR	GeneID:131013430

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797479.1`
2	Chromosome	染色体	0.00000	`XP_057797479.1`
3	Centromere	着丝粒	0.00000	`XP_057797479.1`
4	Chromatin	染色质	0.00000	`XP_057797479.1`
5	Telomere	端粒	0.00000	`XP_057797479.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40696518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B31,B50
`Chr2:40696521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr2:40696608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:40696609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C12,C23
`Chr2:40696618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C63
`Chr2:40698041`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A6
`Chr2:40698041`	`GA`	`G`	1bp_deletion	CDS_variant	1	A6
`Chr2:40698169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:40698970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:40699961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B29,B93,C2,D1
`Chr2:40700134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,A3,B66,C52,C54
`Chr2:40700377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797479.1

886 aa

443

886

zf-4CXXC_R1

PF10497 zf-4CXXC_R1 129-200 aa

XP_057797480.1

886 aa

443

886

zf-4CXXC_R1

PF10497 zf-4CXXC_R1 129-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797479.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	129	200	1.2e-07	32.5	Zinc-finger domain of monoamine-oxidase A repressor R1
`XP_057797480.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	129	200	1.2e-07	32.5	Zinc-finger domain of monoamine-oxidase A repressor R1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941496.1
AAAAAAAAAATGACGTCGTTTTAGCTCTCCTTCTTGCCCAATTCCTACTGTGCATACCGTCTCTCTGCTAAATTTCTCTTCTCCAATTTCACCATGCTGATATTGAAATTGCTGGAACTACGGTGAGAGAGATAGAGAAGAGTGAGAGAGGAAGAGAGAGATTATCTATCCTCAGCCTGAAATATTCTCACTGATCAGAATAGTTGTTAATGGATCATCCACGTTCCATCTCTGCGGGAGGTGAGGACAATGTTGCAATT...

XM_057941497.1
TTAGCTCTCCTTCTTGCCCAATTCCTACTGTGCATACCGTCTCTCTGCTAAATTTCTCTTCTCCAATTTCACCATGCTGATATTGAAATTGCTGGAACTACGGTGAGAGAGATAGAGAAGAGTGAGAGAGGAAGAGAGAGATTATCTATCCTCAGCCTGAAATATTCTCACTGATCAGTTGTTAATGGATCATCCACGTTCCATCTCTGCGGGAGGTGAGGACAATGTTGCAATTCCCGATGATTTGCGTTGTAAGAGAT...

CDS

2 records

下载 CDS FASTA

LOC131013430
ATGCGTGCAAGTATAAAGAAAGCTAAGAGGAAATCCGTAGGTGAAAGTGATATCTATTTGGAAAGCAAGAGTGATGATATGGATCTACCACTCAGTTCTCAATTTGGGGATTACTCTGGGTCCTCTGGGAAGAAGAAGAAGGAGAAATCATCGAAAGCCCAGGCCAGTTACTCACCTGAGATGCCGGCGGGCAGGAGTCTTTCAGGTCGAAGTTCTCTGAGGTCAACTGATGATCTTGACAGAGATGGGTCTGACTATGA...

Protein

2 records

下载 Protein FASTA

XP_057797479.1
MRASIKKAKRKSVGESDIYLESKSDDMDLPLSSQFGDYSGSSGKKKKEKSSKAQASYSPEMPAGRSLSGRSSLRSTDDLDRDGSDYEDSRRSYRTPPTSVVDSERSKSQKMFEISPMTETSDGSSESSDDTEGQPCHQCRSTNKDKVVWCLKCDRRGYCENCILTWYSDISVQEIQRVCPACRGTCSCRVCMRGDNLIKARIREISAQDKLQYLYCLLSAVLPIVKRIHAEQCFEVELEKRLRGNEIDLVRTKLNADEQM...

XP_057797480.1
MRASIKKAKRKSVGESDIYLESKSDDMDLPLSSQFGDYSGSSGKKKKEKSSKAQASYSPEMPAGRSLSGRSSLRSTDDLDRDGSDYEDSRRSYRTPPTSVVDSERSKSQKMFEISPMTETSDGSSESSDDTEGQPCHQCRSTNKDKVVWCLKCDRRGYCENCILTWYSDISVQEIQRVCPACRGTCSCRVCMRGDNLIKARIREISAQDKLQYLYCLLSAVLPIVKRIHAEQCFEVELEKRLRGNEIDLVRTKLNADEQM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器